Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20780 and ABZR87_RS20785 are separated by 18 nucleotidesABZR87_RS20785 and ABZR87_RS20790 are separated by 262 nucleotidesABZR87_RS20790 and ABZR87_RS20795 overlap by 1 nucleotidesABZR87_RS20795 and ABZR87_RS20800 overlap by 4 nucleotides ABZR87_RS20780: ABZR87_RS20780 - FAD-dependent oxidoreductase, at 1,049,030 to 1,050,709 _RS20780 ABZR87_RS20785: ABZR87_RS20785 - DUF2783 domain-containing protein, at 1,050,728 to 1,050,934 _RS20785 ABZR87_RS20790: ABZR87_RS20790 - RNA ligase RtcB family protein, at 1,051,197 to 1,052,324 _RS20790 ABZR87_RS20795: ABZR87_RS20795 - peptide chain release factor H, at 1,052,324 to 1,052,941 _RS20795 ABZR87_RS20800: ABZR87_RS20800 - aldo/keto reductase, at 1,052,938 to 1,053,990 _RS20800
Group Condition ABZR87_RS20780 ABZR87_RS20785 ABZR87_RS20790 ABZR87_RS20795 ABZR87_RS20800
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 -3.6 +0.2 +0.1 -0.8
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 -3.9 +0.0 -0.2 +0.1
root root sample 6; outgrowth in LB -0.5 -3.5 +0.2 -0.3 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 -4.3 +0.2 +0.5 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 -3.7 +0.4 -0.3 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.0 -2.6 -0.5 +0.0 +0.3
carbon source succinate (C) -0.0 -1.2 -0.2 -0.6 -0.0
rhizosphere rhizosphere sample 5; outgrowth in LB -0.0 -1.9 -0.1 -0.2 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB -0.0 -1.8 +0.1 +0.4 -0.7
carbon source Sebacic (C) +0.1 -0.8 +0.3 -1.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -2.6 +0.3 +0.3 +0.2
phage Ra1_0.1 -0.1 -1.7 +0.0 +0.3 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.9 -0.7 +0.0 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.1 -2.1 +0.2 +0.5 -0.0
root root sample 5; outgrowth in LB +0.5 -1.9 -0.1 +0.3 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.1 -0.2 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -1.7 +0.8 +0.0 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.0 +0.9 +0.4 -1.2 -0.3
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 -0.9 -0.1 +0.9 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -1.4 +0.0 +0.4 +0.2
carbon source Suberic (C) -0.2 +0.9 -0.1 -0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.6 -0.2 +0.8 -0.7
carbon source Valeric (C) -0.1 +1.2 +0.1 -0.8 +0.0
carbon source Octanoic (C) -0.3 +1.3 +0.7 -0.6 -0.4
carbon source Azelaic (C) -0.4 +0.9 +0.5 -0.2 +0.1
carbon source Heptanoic (C) -0.3 +1.2 +0.4 +0.1 +0.1
root root sample 4; outgrowth in LB -0.0 +0.8 +0.1 +0.9 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.4 +0.9 +0.4 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +1.2 +0.6 +0.2 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 +0.6 +0.2 +1.1
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