Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20625 and ABZR87_RS20630 are separated by 71 nucleotidesABZR87_RS20630 and ABZR87_RS20635 are separated by 176 nucleotidesABZR87_RS20635 and ABZR87_RS20640 are separated by 21 nucleotidesABZR87_RS20640 and ABZR87_RS20645 are separated by 149 nucleotides ABZR87_RS20625: ABZR87_RS20625 - MFS transporter, at 1,015,014 to 1,016,417 _RS20625 ABZR87_RS20630: ABZR87_RS20630 - porin, at 1,016,489 to 1,017,589 _RS20630 ABZR87_RS20635: ABZR87_RS20635 - PDR/VanB family oxidoreductase, at 1,017,766 to 1,018,716 _RS20635 ABZR87_RS20640: ABZR87_RS20640 - VOC family protein, at 1,018,738 to 1,019,700 _RS20640 ABZR87_RS20645: ABZR87_RS20645 - aldehyde dehydrogenase, at 1,019,850 to 1,021,352 _RS20645
Group Condition ABZR87_RS20625 ABZR87_RS20630 ABZR87_RS20635 ABZR87_RS20640 ABZR87_RS20645
root root sample 6; outgrowth in LB -0.2 +0.1 -0.5 -0.5 -0.1
micoeukaryotes C.elegans, mixed culture-2 -0.2 -0.1 +0.0 -0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 -0.2 -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 -0.1 -0.2 -0.3
carbon source Octanoic (C) -0.0 -0.5 +0.0 +0.4 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.1 -0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 +0.1 -0.3 -0.4
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 +0.0 +0.4 -0.8 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.1 -0.6 -0.7 +0.8
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +0.4 -0.1 -0.3 -0.4
carbon source L-Glutamic (C) -0.1 +0.1 +0.2 +0.0 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.0 +0.0 -0.6 +0.4 -0.1
soil soil sample 9; outgrowth in LB +0.2 +0.1 -0.1 +0.2 -0.4
carbon source Octanoic (C) -0.1 -0.2 -0.6 +0.3 +0.6
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 +0.0 -0.3 +0.1 +0.4
carbon source Sebacic (C) +0.0 -0.0 -0.3 -0.2 +0.8
nitrogen source nitrogen source nitrite 0.5mM +0.4 -0.2 -0.2 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 -0.0 -0.2 +0.2
nitrogen source nitrogen source nitrite 1mM +0.2 -0.0 -0.2 +0.4 +0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +0.0 +0.1 +0.6 -0.5
nitrogen source nitrogen source nitrate 20mM +0.1 -0.1 -0.0 +0.3 +0.3
nitrogen source nitrogen source nitrite 5mM +0.1 +0.1 -0.3 +0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.0 -0.1 +0.1 +0.3
carbon source Valeric (C) -0.2 +0.3 +0.2 +0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.1 +0.4 +0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.4 -0.2 +0.5 +0.3 -0.0
root root EcoFAB sample 2; outgrowth in LB +0.0 +0.1 +0.1 +0.9 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +0.3 +0.0 +0.6
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 +0.2 +0.3 +0.3 +0.2
root root sample 5; outgrowth in LB +0.2 +0.4 +0.4 +0.2 +0.3
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