Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20585 and ABZR87_RS20590 are separated by 36 nucleotidesABZR87_RS20590 and ABZR87_RS20595 are separated by 60 nucleotidesABZR87_RS20595 and ABZR87_RS20600 are separated by 631 nucleotidesABZR87_RS20600 and ABZR87_RS20605 are separated by 123 nucleotides ABZR87_RS20585: ABZR87_RS20585 - tRNA-Ala, at 1,008,659 to 1,008,734 _RS20585 ABZR87_RS20590: ABZR87_RS20590 - tRNA-Ile, at 1,008,771 to 1,008,847 _RS20590 ABZR87_RS20595: ABZR87_RS20595 - 16S ribosomal RNA, at 1,008,908 to 1,010,447 _RS20595 ABZR87_RS20600: ABZR87_RS20600 - hypothetical protein, at 1,011,079 to 1,011,780 _RS20600 ABZR87_RS20605: ABZR87_RS20605 - DUF4337 domain-containing protein, at 1,011,904 to 1,012,476 _RS20605
Group Condition ABZR87_RS20585 ABZR87_RS20590 ABZR87_RS20595 ABZR87_RS20600 ABZR87_RS20605
carbon source Octanoic (C) N.D. N.D. N.D. -0.1 -1.6
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. -0.1 -0.6
root root sample 5; outgrowth in LB N.D. N.D. N.D. +0.3 -0.9
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. N.D. +0.1 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.1 -0.5
micoeukaryotes C.elegans, mixed culture-1 N.D. N.D. N.D. -0.3 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. N.D. N.D. -0.0 -0.5
nitrogen source nitrogen source nitrite 1mM N.D. N.D. N.D. -0.0 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. +0.1 -0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.4 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. +0.2 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. +0.2 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. +0.4 -0.5
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. -0.7 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. N.D. N.D. +0.3 -0.2
carbon source Azelaic (C) N.D. N.D. N.D. -0.2 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. N.D. -0.2 +0.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. N.D. N.D. -0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.1 +0.5
carbon source L-Glutamic (C) N.D. N.D. N.D. +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. +0.2 +0.3
root root EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. +0.3 +0.2
soil soil sample 3; outgrowth in LB N.D. N.D. N.D. +0.1 +0.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. N.D. N.D. -0.1 +0.6
root root sample 4; outgrowth in LB N.D. N.D. N.D. +0.1 +0.4
root root sample 6; outgrowth in LB N.D. N.D. N.D. +0.2 +0.3
carbon source Hexanoic (C) N.D. N.D. N.D. +0.2 +0.4
phage Ra1_0.1 N.D. N.D. N.D. +0.3 +0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. -0.1 +0.9
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. N.D. N.D. +0.2 +0.6
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