Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS20555 and ABZR87_RS20560 are separated by 527 nucleotidesABZR87_RS20560 and ABZR87_RS20565 are separated by 6 nucleotidesABZR87_RS20565 and ABZR87_RS20570 overlap by 68 nucleotidesABZR87_RS20570 and ABZR87_RS20575 are separated by 332 nucleotides ABZR87_RS20555: ABZR87_RS20555 - helix-turn-helix transcriptional regulator, at 998,176 to 998,709 _RS20555 ABZR87_RS20560: ABZR87_RS20560 - error-prone DNA polymerase, at 999,237 to 1,002,476 _RS20560 ABZR87_RS20565: ABZR87_RS20565 - DNA polymerase Y family protein, at 1,002,483 to 1,004,066 _RS20565 ABZR87_RS20570: ABZR87_RS20570 - translesion DNA synthesis-associated protein ImuA, at 1,003,999 to 1,004,955 _RS20570 ABZR87_RS20575: ABZR87_RS20575 - 5S ribosomal RNA, at 1,005,288 to 1,005,400 _RS20575
Group Condition ABZR87_RS20555 ABZR87_RS20560 ABZR87_RS20565 ABZR87_RS20570 ABZR87_RS20575
soil soil EcoFAB sample 1; outgrowth in LB -4.6 -0.1 -0.4 +0.2 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -3.8 -0.0 -0.1 -0.2 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -3.3 -0.1 -0.1 -0.2 N.D.
root root EcoFAB sample 1; outgrowth in LB -3.4 -0.0 +0.1 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -0.1 -0.2 -0.5 N.D.
soil soil sample 9; outgrowth in LB -2.5 -0.0 -0.2 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.5 -0.0 -0.1 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.9 +0.1 -0.0 +0.1 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.4 +0.2 +0.0 -0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.6 +0.2 +0.0 -0.1 N.D.
carbon source Hexanoic (C) -2.3 -0.1 -0.1 -0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 -0.1 -0.4 +0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.5 +0.1 -0.0 -0.9 N.D.
soil soil sample 1; outgrowth in LB -2.0 -0.1 -0.1 -0.1 N.D.
soil soil sample 2; outgrowth in LB -1.6 -0.1 -0.2 -0.3 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -1.8 -0.1 +0.0 -0.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.7 -0.0 +0.1 -0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 -0.1 -0.5 +0.2 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.8 -0.0 +0.2 -0.1 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.5 +0.1 -0.2 -0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -2.2 +0.2 +0.0 +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 +0.2 -0.3 +0.5 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.6 -0.1 +0.2 -0.3 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 +0.1 +0.1 +0.2 N.D.
root root EcoFAB sample 2; outgrowth in LB -1.9 +0.2 +0.0 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 -0.0 +0.3 +0.3 N.D.
carbon source Octanoic (C) +1.8 -0.2 +0.1 +0.1 N.D.
carbon source Octanoic (C) +2.3 -0.2 -0.1 +0.2 N.D.
carbon source Disodium Glutarate (C) +3.2 +0.0 -0.0 -0.0 N.D.
carbon source Disodium Glutarate (C) +3.2 +0.0 -0.0 +0.0 N.D.
remove
ABZR87_RS20555
plot		 remove
ABZR87_RS20560
plot		 remove
ABZR87_RS20565		 remove
ABZR87_RS20570
plot		 remove
ABZR87_RS20575
plot