Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS20540 and ABZR87_RS20545 are separated by 129 nucleotidesABZR87_RS20545 and ABZR87_RS20550 overlap by 4 nucleotidesABZR87_RS20550 and ABZR87_RS20555 are separated by 146 nucleotidesABZR87_RS20555 and ABZR87_RS20560 are separated by 527 nucleotides ABZR87_RS20540: ABZR87_RS20540 - LysR family transcriptional regulator, at 994,998 to 995,912 _RS20540 ABZR87_RS20545: ABZR87_RS20545 - aldo/keto reductase, at 996,042 to 996,875 _RS20545 ABZR87_RS20550: ABZR87_RS20550 - SLC13 family permease, at 996,872 to 998,029 _RS20550 ABZR87_RS20555: ABZR87_RS20555 - helix-turn-helix transcriptional regulator, at 998,176 to 998,709 _RS20555 ABZR87_RS20560: ABZR87_RS20560 - error-prone DNA polymerase, at 999,237 to 1,002,476 _RS20560
Group Condition ABZR87_RS20540 ABZR87_RS20545 ABZR87_RS20550 ABZR87_RS20555 ABZR87_RS20560
soil soil EcoFAB sample 1; outgrowth in LB +0.4 -0.1 +0.2 -4.6 -0.1
root root EcoFAB sample 1; outgrowth in LB -0.2 +0.2 +0.0 -3.4 -0.0
soil soil EcoFAB sample 2; outgrowth in LB +0.2 +0.1 +0.2 -3.8 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 +0.0 +0.0 -3.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.0 -0.1 -2.9 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.3 +0.0 -2.0 +0.1
carbon source Hexanoic (C) +0.0 -0.3 +0.1 -2.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.0 +0.1 -2.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 -0.1 -2.6 +0.2
soil soil sample 9; outgrowth in LB +0.2 +0.1 -0.1 -2.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -0.4 -1.4 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.1 +0.1 -2.2 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 -0.1 -0.0 -1.5 -0.0
root root EcoFAB sample 2; outgrowth in LB -0.2 +0.0 -0.1 -1.9 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.3 -0.3 -2.3 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.0 -0.0 -0.0 -1.8 -0.0
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 -0.4 +0.2 -1.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.1 -0.2 -2.1 -0.1
soil soil sample 1; outgrowth in LB +0.0 +0.2 +0.2 -2.0 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.5 +0.2 +0.1 -2.4 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 +0.2 +0.0 -1.7 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 +0.2 +0.3 -1.8 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.1 -0.0 -2.1 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 +0.1 +0.1 -1.5 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.3 +0.0 +0.1 -1.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 +0.3 -1.2 -0.1
carbon source Octanoic (C) -0.3 +0.1 +0.7 +1.8 -0.2
carbon source Octanoic (C) -0.4 +0.1 +0.4 +2.3 -0.2
carbon source Disodium Glutarate (C) -0.0 -0.0 +0.2 +3.2 +0.0
carbon source Disodium Glutarate (C) -0.0 +0.2 +0.0 +3.2 +0.0
remove
ABZR87_RS20540
plot		 remove
ABZR87_RS20545
plot		 remove
ABZR87_RS20550		 remove
ABZR87_RS20555
plot		 remove
ABZR87_RS20560
plot