Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20510 and ABZR87_RS20515 are separated by 199 nucleotidesABZR87_RS20515 and ABZR87_RS20520 are separated by 32 nucleotidesABZR87_RS20520 and ABZR87_RS20525 are separated by 28 nucleotidesABZR87_RS20525 and ABZR87_RS20530 are separated by 145 nucleotides ABZR87_RS20510: ABZR87_RS20510 - LysR family transcriptional regulator, at 989,806 to 989,880 _RS20510 ABZR87_RS20515: ABZR87_RS20515 - ferredoxin FdxA, at 990,080 to 990,418 _RS20515 ABZR87_RS20520: ABZR87_RS20520 - crotonase/enoyl-CoA hydratase family protein, at 990,451 to 991,272 _RS20520 ABZR87_RS20525: ABZR87_RS20525 - Mpo1-like protein, at 991,301 to 991,834 _RS20525 ABZR87_RS20530: ABZR87_RS20530 - Crp/Fnr family transcriptional regulator, at 991,980 to 992,711 _RS20530
Group Condition ABZR87_RS20510 ABZR87_RS20515 ABZR87_RS20520 ABZR87_RS20525 ABZR87_RS20530
carbon source Octanoic (C) N.D. -1.1 +0.1 +0.1 -0.5
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.9 -0.2 -0.2 -0.0
carbon source adipate (C) N.D. -0.0 -0.2 -0.3 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -1.1 +0.2 +0.2 -0.5
carbon source acetate (C) N.D. -0.5 -0.3 +0.0 -0.3
carbon source Sebacic (C) N.D. -0.4 -0.5 -0.4 +0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.1 -0.4 +0.6 -0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.8 +0.1 -0.1 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. -0.4 +0.2 -0.1 -0.5
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.2 -1.0 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 +0.2 -0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 +0.4 +0.3 -0.0
soil soil sample 7; outgrowth in LB N.D. -0.7 -0.1 +0.3 -0.2
nitrogen source nitrogen source nitrate 5mM N.D. -0.4 +0.4 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.6 +0.6 -0.3
root root sample 6; outgrowth in LB N.D. -0.4 +0.2 +0.2 -0.4
soil soil sample 6; outgrowth in LB N.D. -0.5 -0.3 +0.3 +0.2
carbon source Pimelic (C) N.D. +0.5 +0.1 -0.3 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.4 +0.4 +0.3
carbon source Dodecandioic (C) N.D. +0.7 -0.3 -0.1 -0.3
carbon source Lauric (C) N.D. +0.6 +0.2 -0.0 -0.4
root root EcoFAB sample 2; outgrowth in LB N.D. -0.5 +0.5 +0.1 +0.3
carbon source propionate (C) N.D. +0.7 +0.1 +0.1 -0.3
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. +0.5 +0.5 -0.1 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.3 +0.4 +0.2 +0.5
carbon source D-Galactose (C) N.D. +0.3 +0.4 +0.3 -0.1
carbon source Octanoic (C) N.D. +1.0 +0.7 -0.7 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.4 -0.1 +1.3 -0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.4 +0.5 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.6 +0.2 +0.5 +0.1
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