Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20415 and ABZR87_RS20420 are separated by 2 nucleotidesABZR87_RS20420 and ABZR87_RS20425 are separated by 68 nucleotidesABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotidesABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides ABZR87_RS20415: ABZR87_RS20415 - type II TA system antitoxin MqsA family protein, at 968,472 to 968,873 _RS20415 ABZR87_RS20420: ABZR87_RS20420 - type II toxin-antitoxin system MqsR family toxin, at 968,876 to 969,178 _RS20420 ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259 _RS20425 ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828 _RS20430 ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795 _RS20435
Group Condition ABZR87_RS20415 ABZR87_RS20420 ABZR87_RS20425 ABZR87_RS20430 ABZR87_RS20435
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.1 -0.7 -1.0 -0.8
root root sample 6; outgrowth in LB -0.3 -0.3 -0.2 -0.7 +0.5
carbon source Sebacic (C) +0.2 +0.1 -0.6 +0.5 -0.8
rhizosphere rhizosphere sample 8; outgrowth in LB +0.2 +0.1 +0.0 -1.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.2 -0.2 -0.5 +0.5
carbon source Pimelic (C) -0.8 +0.4 +0.2 -0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 -0.0 -0.6 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.4 -0.4 +0.4 +0.4
root root sample 5; outgrowth in LB -0.3 -0.6 -0.3 +0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.5 -0.2 -0.8 +0.8
carbon source D-Glucose (C) +0.3 +0.1 +0.1 -0.4 -0.4
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.1 +0.1 -0.7 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.7 -0.2 -1.4 +0.8
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 -0.2 +0.0 +0.4 +0.5
soil soil sample 2; outgrowth in LB -0.5 +0.1 -0.0 +0.4 +0.3
carbon source Heptanoic (C) -0.4 +0.1 +0.1 +0.1 +0.7
carbon source Azelaic (C) -0.2 +0.5 -0.4 +0.7 -0.1
soil soil sample 6; outgrowth in LB +0.1 -0.2 -0.1 +0.5 +0.5
carbon source Disodium Glutarate (C) -0.2 -0.1 -0.1 +1.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.2 +0.2 -0.2 +0.6
soil soil EcoFAB sample 2; outgrowth in LB -0.1 -0.1 -0.1 +0.9 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.2 -0.0 +0.7 +0.9
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -0.1 -0.1 +1.5 +0.3
soil soil sample 3; outgrowth in LB -0.1 -0.1 +0.1 +0.4 +0.8
carbon source Octanoic (C) -0.4 +0.5 -0.2 +1.0 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 -0.3 +0.6 -0.2 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.6 +0.4 -0.0 +0.7
phage Ra1_0.1 -0.3 +0.0 +0.5 +0.5 +0.8
phage Ra3_1 -0.4 +0.2 +0.5 +0.7 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.6 +0.0 -0.3 +2.1
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ABZR87_RS20415
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ABZR87_RS20420
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ABZR87_RS20430
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ABZR87_RS20435
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