Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20340 and ABZR87_RS20345 are separated by 183 nucleotidesABZR87_RS20345 and ABZR87_RS20350 are separated by 117 nucleotidesABZR87_RS20350 and ABZR87_RS20355 are separated by 55 nucleotidesABZR87_RS20355 and ABZR87_RS20360 overlap by 4 nucleotides ABZR87_RS20340: ABZR87_RS20340 - 5-dehydro-4-deoxyglucarate dehydratase, at 952,713 to 953,651 _RS20340 ABZR87_RS20345: ABZR87_RS20345 - SMP-30/gluconolactonase/LRE family protein, at 953,835 to 954,896 _RS20345 ABZR87_RS20350: ABZR87_RS20350 - LysR substrate-binding domain-containing protein, at 955,014 to 955,910 _RS20350 ABZR87_RS20355: ABZR87_RS20355 - hypothetical protein, at 955,966 to 956,331 _RS20355 ABZR87_RS20360: ABZR87_RS20360 - ABC transporter substrate-binding protein, at 956,328 to 957,269 _RS20360
Group Condition ABZR87_RS20340 ABZR87_RS20345 ABZR87_RS20350 ABZR87_RS20355 ABZR87_RS20360
soil soil EcoFAB sample 1; outgrowth in LB -0.7 -0.1 -0.3 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.0 -0.5 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -0.5 N.D. -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 +0.1 -0.9 N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +0.1 N.D. -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 +0.4 -0.4 N.D. -0.6
carbon source Octanoic (C) -0.6 +0.0 +0.4 N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.5 +0.2 -0.4 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.4 -0.3 N.D. -0.0
root root sample 4; outgrowth in LB -0.4 +0.2 +0.3 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.1 +0.3 N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.7 +0.3 +0.0 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 +0.5 N.D. -0.4
carbon source Disodium Glutarate (C) +0.2 +0.2 -0.1 N.D. -0.4
root root EcoFAB sample 2; outgrowth in LB +0.1 -0.2 -0.3 N.D. +0.4
nitrogen source nitrogen source nitrite 0.5mM +0.4 +0.2 -0.4 N.D. -0.2
carbon source Octanoic (C) +0.2 -0.5 +0.3 N.D. +0.1
carbon source Dodecandioic (C) -0.1 -0.2 +0.5 N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 -0.2 N.D. +0.5
carbon source Sebacic (C) +0.1 -0.4 +0.3 N.D. +0.4
carbon source Pimelic (C) -0.1 -0.2 +0.4 N.D. +0.3
carbon source Lauric (C) +0.2 -0.2 +0.4 N.D. +0.2
carbon source propionate (C) -0.1 -0.1 +0.8 N.D. -0.0
soil soil sample 6; outgrowth in LB -0.1 +0.1 +0.6 N.D. +0.1
carbon source Valeric (C) +0.1 -0.0 +0.6 N.D. +0.2
root root EcoFAB sample 1; outgrowth in LB -0.3 +0.5 +0.6 N.D. +0.1
carbon source succinate (C) +0.3 +0.2 +0.5 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 +0.3 N.D. +0.4
root root sample 5; outgrowth in LB +0.1 +0.6 -0.0 N.D. +0.8
root root sample 6; outgrowth in LB +0.0 +0.0 +1.6 N.D. +0.0
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