Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotidesABZR87_RS20230 and ABZR87_RS20235 are separated by 105 nucleotidesABZR87_RS20235 and ABZR87_RS20240 overlap by 8 nucleotidesABZR87_RS20240 and ABZR87_RS20245 are separated by 34 nucleotides ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153 _RS20225 ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725 _RS20230 ABZR87_RS20235: ABZR87_RS20235 - type VI secretion system contractile sheath large subunit, at 926,831 to 928,315 _RS20235 ABZR87_RS20240: ABZR87_RS20240 - type VI secretion system contractile sheath small subunit, at 928,308 to 928,820 _RS20240 ABZR87_RS20245: ABZR87_RS20245 - hypothetical protein, at 928,855 to 929,442 _RS20245
Group Condition ABZR87_RS20225 ABZR87_RS20230 ABZR87_RS20235 ABZR87_RS20240 ABZR87_RS20245
rhizosphere rhizosphere sample 3; outgrowth in LB -1.6 -1.2 +0.0 -0.1 +0.2
root root sample 6; outgrowth in LB -0.6 +0.3 -0.3 -0.7 -1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.4 +0.1 -0.6 +0.0
carbon source Carbon source D-Glucose 10 mM -0.2 -0.6 -0.2 -0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.6 +0.4 -0.1 -0.8
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 -0.5 -0.4 -0.2 -0.5
soil soil sample 9; outgrowth in LB -0.3 -0.1 -0.1 -0.9 -0.3
nitrogen source nitrogen source nitrite 0.5mM -0.3 -1.0 -0.1 -0.2 +0.0
nitrogen source nitrogen source nitrate 20mM -0.5 -0.5 -0.1 -0.0 -0.5
rhizosphere rhizosphere sample 7; outgrowth in LB -0.6 +0.1 -0.1 +0.2 -0.9
rhizosphere rhizosphere sample 9; outgrowth in LB +0.7 -0.1 -0.1 -0.4 -1.1
root root sample 4; outgrowth in LB +0.2 -0.3 -0.0 +0.5 -0.5
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.9 +0.2 +0.4 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +1.7 -0.0 -0.1 +0.2 -1.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.7 -0.0 +0.4 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.0 +0.0 +0.8 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.0 +0.3 +1.1 -0.5
soil soil EcoFAB sample 1; outgrowth in LB +0.6 +0.5 +0.0 -0.6 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.5 -0.0 +0.2 +0.9
root root EcoFAB sample 1; outgrowth in LB +0.1 +0.3 +0.1 -0.8 +1.2
carbon source Octanoic (C) +0.5 +0.1 +0.5 +0.3 -0.6
carbon source Heptanoic (C) +0.0 +0.7 +0.5 +0.2 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 +0.7 +0.3 +0.0 +0.4
carbon source Heptanoic (C) -0.1 +0.7 +0.5 +0.1 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.0 +0.1 +0.9 +0.1
carbon source Sebacic (C) +0.2 -0.0 +0.2 +0.8 +0.8
carbon source Dodecandioic (C) +0.3 +0.2 +0.3 +0.8 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.4 +1.7 +0.1 +0.4 -0.2
carbon source Lauric (C) +0.1 +0.5 +0.7 +0.5 +0.6
carbon source Octanoic (C) +0.5 +0.5 +0.9 +0.7 +0.1
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ABZR87_RS20225
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ABZR87_RS20230
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