Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS20025 and ABZR87_RS20030 overlap by 4 nucleotidesABZR87_RS20030 and ABZR87_RS20035 are separated by 253 nucleotidesABZR87_RS20035 and ABZR87_RS20040 are separated by 28 nucleotidesABZR87_RS20040 and ABZR87_RS20045 are separated by 30 nucleotides ABZR87_RS20025: ABZR87_RS20025 - response regulator transcription factor, at 871,113 to 871,760 _RS20025 ABZR87_RS20030: ABZR87_RS20030 - PAS domain-containing sensor histidine kinase, at 871,757 to 873,145 _RS20030 ABZR87_RS20035: ABZR87_RS20035 - helix-turn-helix domain-containing protein, at 873,399 to 874,199 _RS20035 ABZR87_RS20040: ABZR87_RS20040 - BON domain-containing protein, at 874,228 to 874,875 _RS20040 ABZR87_RS20045: ABZR87_RS20045 - TraR/DksA family transcriptional regulator, at 874,906 to 875,268 _RS20045
Group Condition ABZR87_RS20025 ABZR87_RS20030 ABZR87_RS20035 ABZR87_RS20040 ABZR87_RS20045
micoeukaryotes C.elegans, mixed culture-2 -0.3 -0.3 -0.8 -0.3 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.2 -0.5 -0.3 -0.1 -0.2
carbon source Azelaic (C) -0.1 -0.3 +0.0 -0.5 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.0 -0.7 -0.3 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.2 -0.6 -0.1 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -0.4 -0.2 +0.0 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.0 -0.6 -0.2 +0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.3 -0.1 -0.9 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.2 -0.3 +0.1 -0.7 +0.5
soil soil EcoFAB sample 2; outgrowth in LB -0.1 -0.3 +0.3 -0.3 -0.2
nitrogen source nitrogen source nitrate 5mM +0.1 -0.2 -0.5 +0.3 -0.1
root root sample 6; outgrowth in LB +0.2 +0.2 -0.2 -0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 +0.5 -0.2 -0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.2 -0.4 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.1 -0.9 +0.0 +0.3
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.5 -0.1 -0.4 -0.1
micoeukaryotes C.elegans, mixed culture-1 -0.4 -0.4 +0.1 +0.2 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 -0.1 -0.6 -0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -0.0 -0.5 +0.4
carbon source Octanoic (C) -0.2 -0.2 -0.4 -0.3 +0.9
root root EcoFAB sample 2; outgrowth in LB +0.4 -0.0 -0.6 +0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 -0.3 +0.2 +0.4
carbon source succinate (C) +0.1 +0.3 -0.4 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.6 -0.9 -0.1 +0.2
root root sample 4; outgrowth in LB +0.3 +0.5 -0.4 -0.1 +0.1
root root sample 5; outgrowth in LB -0.1 -0.2 -0.1 +0.3 +0.6
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 +0.5 -0.1 -0.2 +0.3
carbon source Octanoic (C) -0.1 -0.5 +0.5 +0.2 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 -0.1 +0.7 +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 +0.3 +0.1 -0.0 +0.7
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