Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotidesABZR87_RS19990 and ABZR87_RS19995 are separated by 17 nucleotidesABZR87_RS19995 and ABZR87_RS20000 are separated by 235 nucleotidesABZR87_RS20000 and ABZR87_RS20005 are separated by 37 nucleotides ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663 _RS19985 ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024 _RS19990 ABZR87_RS19995: ABZR87_RS19995 - Hsp20/alpha crystallin family protein, at 864,042 to 864,464 _RS19995 ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 ABZR87_RS20005: ABZR87_RS20005 - hypothetical protein, at 866,285 to 866,926 _RS20005
Group Condition ABZR87_RS19985 ABZR87_RS19990 ABZR87_RS19995 ABZR87_RS20000 ABZR87_RS20005
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 -1.3 -0.2 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.6 -0.5 -0.9 +0.2 -0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -0.2 -1.3 +0.2 -0.3
carbon source Sebacic (C) -0.3 +0.1 -0.8 -0.2 +0.1
micoeukaryotes C.elegans, mixed culture-1 -0.4 -0.4 +0.0 +0.1 -0.2
soil soil sample 4; outgrowth in LB +0.0 +0.1 -0.9 -0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.5 -0.2 +0.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.5 -0.3 -0.1 +0.2 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 +0.2 -0.3 -0.3 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.0 -0.6 -0.1 -0.1
micoeukaryotes C.elegans, mixed culture-2 -0.6 -0.3 -0.0 +0.2 +0.0
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.1 -0.7 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.1 -0.2 -0.3
carbon source Dodecandioic (C) -0.1 -0.1 -0.5 +0.0 +0.2
carbon source Heptanoic (C) -0.2 -0.2 -0.3 +0.0 +0.2
phage Ra3_0.1 -0.1 +0.2 -0.3 +0.0 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -0.3 +0.0 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 +0.2 -0.4 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 -0.7 +0.3 +0.0
root root EcoFAB sample 1; outgrowth in LB +0.1 +0.3 -0.2 +0.1 -0.3
carbon source Azelaic (C) +0.1 +0.1 -0.5 +0.2 +0.0
root root sample 5; outgrowth in LB -0.3 -0.1 +0.2 +0.4 -0.1
carbon source Octanoic (C) -0.1 -0.0 -0.5 +0.2 +0.5
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.1 +0.9 +0.0 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 -0.2 -0.2 +0.4 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.2 -0.0 +0.2 -0.1 +0.4
root root sample 6; outgrowth in LB -0.1 +0.1 +0.9 +0.1 -0.3
root root sample 4; outgrowth in LB +0.2 +0.4 +0.2 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 +0.5 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.0 +1.1 +0.1 +0.1
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