Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19910 and ABZR87_RS19915 overlap by 4 nucleotidesABZR87_RS19915 and ABZR87_RS19920 are separated by 353 nucleotidesABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotidesABZR87_RS19925 and ABZR87_RS19930 are separated by 51 nucleotides ABZR87_RS19910: ABZR87_RS19910 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 843,390 to 844,835 _RS19910 ABZR87_RS19915: ABZR87_RS19915 - acetate/propionate family kinase, at 844,832 to 846,013 _RS19915 ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948 _RS19920 ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631 _RS19925 ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251 _RS19930
Group Condition ABZR87_RS19910 ABZR87_RS19915 ABZR87_RS19920 ABZR87_RS19925 ABZR87_RS19930
carbon source Octanoic (C) +0.5 -0.2 -0.6 -0.4 -0.5
carbon source Sebacic (C) +0.1 +0.3 -0.8 -0.4 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 -0.2 -0.3 -0.1 -0.2
root root sample 6; outgrowth in LB +0.1 -0.1 -0.9 -0.2 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.1 -0.6 +0.0 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.2 -0.5 -0.3 -0.0
root root sample 4; outgrowth in LB -0.5 -0.1 +0.0 +0.2 -0.2
phage Ra3_1 +0.2 -0.0 -0.4 -0.1 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.2 +0.2 +0.0 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.2 +0.1 +0.2 -0.1 -0.3
phage Ra1_0.1 +0.1 +0.1 -0.1 -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 +0.2 +0.0 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 -0.1 -0.6 -0.3 -0.2
carbon source L-Glutamic (C) +0.1 -0.2 -0.3 +0.1 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 -0.0 +0.5 -0.2 +0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.0 +0.3 +0.6 -0.5 -0.4
nitrogen source nitrogen source nitrate 5mM -0.2 -0.0 +0.3 +0.2 -0.1
soil soil sample 9; outgrowth in LB -0.2 +0.1 +0.3 +0.2 -0.2
carbon source Protocatechuic Acid (C) +0.2 +0.1 -0.1 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -0.0 -0.1 +0.2
root root sample 5; outgrowth in LB -0.2 +0.1 -0.1 +0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 +0.1 -0.2 +0.5
soil soil sample 7; outgrowth in LB +0.2 +0.0 +0.4 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.0 -0.0 -0.1 +0.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.4 +0.1 +0.3 +0.0 -0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.2 +0.1 +0.4 +0.0 +0.1
carbon source Protocatechuic Acid (C) +0.2 +0.0 +0.2 +0.1 +0.3
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.2 +0.4 +0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.4 +0.1 +0.5
carbon source D-Glucose (C) +0.3 +0.1 +0.2 +0.3 +0.1
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