Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotidesABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotidesABZR87_RS19770 and ABZR87_RS19775 are separated by 156 nucleotidesABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotides ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023 _RS19760 ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796 _RS19765 ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188 _RS19770 ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247 _RS19775 ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834 _RS19780
Group Condition ABZR87_RS19760 ABZR87_RS19765 ABZR87_RS19770 ABZR87_RS19775 ABZR87_RS19780
carbon source Octanoic (C) -1.1 N.D. -3.1 -0.2 -0.2
carbon source Octanoic (C) +0.3 N.D. -3.6 -0.1 -0.7
carbon source Heptanoic (C) -0.6 N.D. -1.9 -0.1 -0.4
carbon source Heptanoic (C) -0.2 N.D. -1.7 -0.3 -0.3
soil soil EcoFAB sample 1; outgrowth in LB -0.5 N.D. -0.4 -0.9 -0.2
carbon source Lauric (C) -0.6 N.D. -0.9 -0.1 -0.3
carbon source Sebacic (C) -1.0 N.D. -0.1 +0.2 -0.4
carbon source butyrate (C) -0.5 N.D. -0.7 -0.0 -0.1
phage Ra1_0.1 -0.9 N.D. -0.2 -0.1 +0.0
carbon source Dodecandioic (C) -0.2 N.D. -0.7 -0.1 -0.1
root root sample 4; outgrowth in LB -0.1 N.D. -0.4 -0.5 +0.0
carbon source Dodecandioic (C) -0.3 N.D. -0.4 -0.2 -0.1
root root EcoFAB sample 2; outgrowth in LB +0.0 N.D. -0.3 -0.5 -0.2
phage Ra1_0.01 -0.8 N.D. -0.0 +0.2 -0.2
carbon source Azelaic (C) -0.1 N.D. -0.6 +0.1 -0.3
soil soil sample 3; outgrowth in LB -0.3 N.D. -0.3 +0.1 -0.3
carbon source Protocatechuic Acid (C) -0.3 N.D. -0.3 +0.2 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 N.D. -0.6 -0.1 -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.2 N.D. -0.5 +0.1 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.0 +0.4 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 N.D. -0.5 -0.0 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. -0.6 +0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. +0.0 +0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. +0.2 -0.2 -0.0
nitrogen source nitrogen source nitrite 0.5mM +0.6 N.D. +0.1 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. -0.2 +0.3 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. +0.1 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. +0.8 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.0 N.D. -0.6 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 N.D. +0.4 -0.0 +0.4
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