Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotidesABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotidesABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotidesABZR87_RS19770 and ABZR87_RS19775 are separated by 156 nucleotides ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734 _RS19755 ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023 _RS19760 ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796 _RS19765 ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188 _RS19770 ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247 _RS19775
Group Condition ABZR87_RS19755 ABZR87_RS19760 ABZR87_RS19765 ABZR87_RS19770 ABZR87_RS19775
carbon source Octanoic (C) +0.3 -1.1 N.D. -3.1 -0.2
carbon source Octanoic (C) +0.1 +0.3 N.D. -3.6 -0.1
carbon source Heptanoic (C) +0.0 -0.6 N.D. -1.9 -0.1
carbon source Heptanoic (C) -0.1 -0.2 N.D. -1.7 -0.3
carbon source Lauric (C) -0.3 -0.6 N.D. -0.9 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -0.5 N.D. -0.4 -0.9
carbon source butyrate (C) +0.2 -0.5 N.D. -0.7 -0.0
carbon source Sebacic (C) -0.1 -1.0 N.D. -0.1 +0.2
carbon source Dodecandioic (C) -0.1 -0.3 N.D. -0.4 -0.2
root root sample 4; outgrowth in LB +0.1 -0.1 N.D. -0.4 -0.5
phage Ra1_0.1 +0.3 -0.9 N.D. -0.2 -0.1
carbon source Dodecandioic (C) +0.1 -0.2 N.D. -0.7 -0.1
phage Ra1_0.01 +0.0 -0.8 N.D. -0.0 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 +0.4 N.D. -0.6 -0.1
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.0 N.D. -0.3 -0.5
carbon source Azelaic (C) +0.1 -0.1 N.D. -0.6 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 +0.3 N.D. -0.5 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB +0.2 +0.2 N.D. -0.5 +0.1
root root sample 5; outgrowth in LB +0.3 +0.2 N.D. -0.2 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 N.D. -0.6 +0.1
root root sample 6; outgrowth in LB +0.4 +0.4 N.D. -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.2 N.D. -0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.1 +0.6 N.D. +0.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.6 -0.1 N.D. -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.3 N.D. -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.6 N.D. +0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.5 N.D. +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 N.D. +0.8 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.7 N.D. +0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +2.0 N.D. -0.6 +0.1
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