Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19720 and ABZR87_RS19725 are separated by 4 nucleotidesABZR87_RS19725 and ABZR87_RS19730 are separated by 274 nucleotidesABZR87_RS19730 and ABZR87_RS19735 are separated by 97 nucleotidesABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotides ABZR87_RS19720: ABZR87_RS19720 - efflux RND transporter periplasmic adaptor subunit, at 801,559 to 802,707 _RS19720 ABZR87_RS19725: ABZR87_RS19725 - TolC family protein, at 802,712 to 803,965 _RS19725 ABZR87_RS19730: ABZR87_RS19730 - MerR family transcriptional regulator, at 804,240 to 804,641 _RS19730 ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161 _RS19735 ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591 _RS19740
Group Condition ABZR87_RS19720 ABZR87_RS19725 ABZR87_RS19730 ABZR87_RS19735 ABZR87_RS19740
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.7 -0.4 -0.0 -0.0 -0.4
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.9 -0.5 +0.1 -0.2 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.0 -1.0 -0.3 +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.8 -0.6 +0.5 -0.4 -0.0
micoeukaryotes C.elegans, mixed culture-2 -0.3 -0.8 +0.1 -0.1 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.4 -0.5 +0.0 -0.2 -0.0
root root EcoFAB sample 1; outgrowth in LB -0.4 -0.2 -0.3 -0.0 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.7 -0.6 +0.6 -0.3 -0.0
micoeukaryotes C.elegans, mixed culture-1 -0.6 -0.8 +0.6 +0.1 -0.2
control NoPredeControl -0.3 -0.5 +0.2 -0.4 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.6 +0.1 +0.1 -0.1 -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.5 -0.6 +0.4 -0.0 +0.1
carbon source Sebacic (C) -0.4 -0.1 -0.2 +0.2 -0.3
soil soil sample 9; outgrowth in LB +0.4 -0.0 -0.1 -0.1 -0.7
root root sample 4; outgrowth in LB +0.2 -0.1 -0.4 -0.3 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.2 -0.2 -0.6 +0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 +0.0 -0.4 +0.1 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.1 -0.2 -0.3 +0.1
root root sample 6; outgrowth in LB +0.2 +0.1 -0.7 +0.1 +0.2
root root sample 5; outgrowth in LB +0.4 -0.3 +0.0 -0.2 +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.4 -0.1 -0.0 -0.2 +0.3
carbon source Octanoic (C) -0.0 -0.2 -0.2 +0.2 +0.5
nitrogen source nitrogen source nitrite 1mM -0.3 -0.2 +0.3 +0.0 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 +0.2 +0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.0 +0.4 +0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 +0.4 +0.7 -0.1
carbon source Octanoic (C) -0.1 -0.1 +0.2 +0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 +0.3 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 +0.5 -0.1 +0.7
nitrogen source nitrogen source nitrite 0.5mM -0.3 +0.0 +0.4 +0.7 +0.7
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