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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides
ABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotides
ABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides
ABZR87_RS19565 and ABZR87_RS19570 are separated by 91 nucleotides
ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458
_RS19550
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394
_RS19560
ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720
_RS19565
ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455
_RS19570
Group
Condition
ABZR87
_RS19550
ABZR87
_RS19555
ABZR87
_RS19560
ABZR87
_RS19565
ABZR87
_RS19570
micoeukaryotes
Dictyostellum sp.mixed culture-2
-1.7
-1.3
-1.6
-2.0
-1.3
micoeukaryotes
C.elegans, mixed culture-1
-1.0
-0.7
-0.6
-1.1
-0.8
micoeukaryotes
C.elegans, mixed culture-2
-1.0
-0.7
-0.8
-0.7
-0.9
micoeukaryotes
Dictyostellum sp.mixed culture-1
-0.8
-0.6
-0.7
-0.9
-0.9
soil
soil sample 6; outgrowth in LB
+0.8
+0.7
+1.0
+0.7
+0.7
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+1.0
+0.4
+1.7
+0.3
+0.6
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.6
+1.2
+0.6
+1.2
+0.4
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+1.2
+1.0
+0.6
+0.8
+0.5
soil
soil sample 7; outgrowth in LB
+0.9
+0.9
+0.8
+0.9
+0.7
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
+0.8
+0.8
+1.2
+1.0
+0.6
rhizosphere
rhizosphere sample 1; outgrowth in LB
+1.1
+0.9
+1.4
+1.1
+0.7
soil
soil sample 3; outgrowth in LB
+1.1
+1.1
+1.4
+1.1
+0.6
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.9
+1.7
+0.9
+0.7
+1.1
soil
soil sample 2; outgrowth in LB
+1.1
+1.2
+1.1
+1.0
+1.0
rhizosphere
rhizosphere sample 3; outgrowth in LB
+1.1
+1.6
+0.8
+1.4
+0.6
root
root sample 6; outgrowth in LB
+1.1
+0.7
+1.4
+1.1
+1.3
rhizosphere
rhizosphere sample 7; outgrowth in LB
+1.1
+1.4
+1.2
+1.3
+0.9
carbon source
Octanoic (C)
+1.0
+1.5
+1.4
+1.5
+0.7
no_plant_soil
no_plant_soil sample 3; outgrowth in LB
+1.4
+1.3
+1.8
+1.6
+0.7
rhizosphere
rhizosphere sample 6; outgrowth in LB
+1.3
+1.1
+1.6
+1.5
+1.3
soil
soil sample 1; outgrowth in LB
+1.6
+1.6
+1.7
+1.4
+1.2
no_plant_soil
no_plant_soil sample 2; outgrowth in LB
+1.7
+1.6
+2.0
+1.9
+0.4
rhizosphere
rhizosphere sample 2; outgrowth in LB
+1.6
+1.5
+1.7
+1.1
+2.0
soil
soil sample 5; outgrowth in LB
+2.1
+1.8
+2.5
+2.0
+1.4
no_plant_rhizosphere
no_plant_rhizosphere sample 2; outgrowth in LB
+2.9
+2.7
+2.6
+2.6
+2.0
rhizosphere
rhizosphere sample 5; outgrowth in LB
+2.6
+2.7
+3.1
+2.6
+2.0
rhizosphere
rhizosphere sample 4; outgrowth in LB
+2.7
+2.5
+3.1
+2.9
+1.9
root
root sample 5; outgrowth in LB
+2.8
+3.1
+3.4
+3.9
+2.5
no_plant_rhizosphere
no_plant_rhizosphere sample 1; outgrowth in LB
+3.3
+3.1
+3.2
+3.4
+2.9
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
+3.4
+3.4
+3.5
+3.7
+2.9
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