Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotidesABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotidesABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotidesABZR87_RS19565 and ABZR87_RS19570 are separated by 91 nucleotides ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458 _RS19550 ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457 _RS19555 ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394 _RS19560 ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720 _RS19565 ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455 _RS19570
Group Condition ABZR87_RS19550 ABZR87_RS19555 ABZR87_RS19560 ABZR87_RS19565 ABZR87_RS19570
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.7 -1.3 -1.6 -2.0 -1.3
micoeukaryotes C.elegans, mixed culture-1 -1.0 -0.7 -0.6 -1.1 -0.8
micoeukaryotes C.elegans, mixed culture-2 -1.0 -0.7 -0.8 -0.7 -0.9
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.8 -0.6 -0.7 -0.9 -0.9
soil soil sample 6; outgrowth in LB +0.8 +0.7 +1.0 +0.7 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +0.4 +1.7 +0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +1.2 +0.6 +1.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 +1.0 +0.6 +0.8 +0.5
soil soil sample 7; outgrowth in LB +0.9 +0.9 +0.8 +0.9 +0.7
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.8 +0.8 +1.2 +1.0 +0.6
rhizosphere rhizosphere sample 1; outgrowth in LB +1.1 +0.9 +1.4 +1.1 +0.7
soil soil sample 3; outgrowth in LB +1.1 +1.1 +1.4 +1.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 +1.7 +0.9 +0.7 +1.1
soil soil sample 2; outgrowth in LB +1.1 +1.2 +1.1 +1.0 +1.0
rhizosphere rhizosphere sample 3; outgrowth in LB +1.1 +1.6 +0.8 +1.4 +0.6
root root sample 6; outgrowth in LB +1.1 +0.7 +1.4 +1.1 +1.3
rhizosphere rhizosphere sample 7; outgrowth in LB +1.1 +1.4 +1.2 +1.3 +0.9
carbon source Octanoic (C) +1.0 +1.5 +1.4 +1.5 +0.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB +1.4 +1.3 +1.8 +1.6 +0.7
rhizosphere rhizosphere sample 6; outgrowth in LB +1.3 +1.1 +1.6 +1.5 +1.3
soil soil sample 1; outgrowth in LB +1.6 +1.6 +1.7 +1.4 +1.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB +1.7 +1.6 +2.0 +1.9 +0.4
rhizosphere rhizosphere sample 2; outgrowth in LB +1.6 +1.5 +1.7 +1.1 +2.0
soil soil sample 5; outgrowth in LB +2.1 +1.8 +2.5 +2.0 +1.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +2.9 +2.7 +2.6 +2.6 +2.0
rhizosphere rhizosphere sample 5; outgrowth in LB +2.6 +2.7 +3.1 +2.6 +2.0
rhizosphere rhizosphere sample 4; outgrowth in LB +2.7 +2.5 +3.1 +2.9 +1.9
root root sample 5; outgrowth in LB +2.8 +3.1 +3.4 +3.9 +2.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +3.3 +3.1 +3.2 +3.4 +2.9
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +3.4 +3.4 +3.5 +3.7 +2.9
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