Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19415 and ABZR87_RS19420 are separated by 97 nucleotidesABZR87_RS19420 and ABZR87_RS19425 are separated by 149 nucleotidesABZR87_RS19425 and ABZR87_RS19430 are separated by 1 nucleotidesABZR87_RS19430 and ABZR87_RS19435 overlap by 4 nucleotides ABZR87_RS19415: ABZR87_RS19415 - LysR family transcriptional regulator, at 725,998 to 726,942 _RS19415 ABZR87_RS19420: ABZR87_RS19420 - hypothetical protein, at 727,040 to 727,369 _RS19420 ABZR87_RS19425: ABZR87_RS19425 - Mut7-C RNAse domain-containing protein, at 727,519 to 728,295 _RS19425 ABZR87_RS19430: ABZR87_RS19430 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 728,297 to 729,727 _RS19430 ABZR87_RS19435: ABZR87_RS19435 - trehalose-phosphatase, at 729,724 to 730,524 _RS19435
Group Condition ABZR87_RS19415 ABZR87_RS19420 ABZR87_RS19425 ABZR87_RS19430 ABZR87_RS19435
carbon source Octanoic (C) +0.1 +0.1 +0.0 -2.0 -3.6
carbon source Pimelic (C) +0.1 +0.1 -0.0 -1.0 -2.8
carbon source Octanoic (C) +0.3 -0.5 -0.4 -1.9 -0.5
carbon source Pimelic (C) -0.0 +0.1 +0.0 -1.2 -1.5
carbon source Heptanoic (C) +0.1 +0.3 -0.0 -1.5 -1.4
carbon source Dodecandioic (C) -0.2 -0.1 -0.1 -0.7 -1.1
carbon source Dodecandioic (C) -0.1 -0.2 +0.2 -0.5 -1.2
carbon source Heptanoic (C) +0.2 +0.0 +0.0 -1.3 -0.8
carbon source propionate (C) +0.1 +0.2 -0.1 -0.8 -1.2
phage Ra1_0.1 +0.1 +0.1 -0.5 +0.0 -1.5
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.4 -0.5 -0.1 -0.7
carbon source Azelaic (C) -0.1 -0.2 +0.0 -0.1 -1.4
carbon source Protocatechuic Acid (C) +0.2 -0.1 -0.3 -0.1 -1.4
carbon source Lauric (C) +0.3 +0.2 +0.2 -1.0 -1.2
soil soil EcoFAB sample 1; outgrowth in LB +0.3 -0.6 +0.1 +0.1 -1.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -0.1 -0.3 -0.2 -0.9
carbon source Protocatechuic Acid (C) -0.0 -0.0 +0.2 -0.6 -0.9
carbon source D-Glucose (C) +0.2 +0.1 -0.1 -0.5 -0.9
carbon source propionate (C) +0.1 +0.2 -0.1 -0.7 -0.8
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 -0.2 -0.1 +0.0 -1.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 -0.0 -0.5 +0.2 -1.0
carbon source succinate (C) +0.1 +0.0 +0.2 -0.3 -1.1
carbon source succinate (C) +0.2 +0.2 +0.2 -0.2 -0.7
root root sample 6; outgrowth in LB -0.1 +0.6 +0.1 -0.4 -0.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +0.4 +0.3 -0.2 -0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.0 -0.2 -0.2 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 +0.2 -0.2 +0.7
nitrogen source nitrogen source nitrate 5mM -0.3 +0.0 +0.2 +0.0 +0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.0 -0.0 -0.3 +2.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 -0.2 +0.2 +2.0
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ABZR87_RS19415
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ABZR87_RS19420
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ABZR87_RS19430
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ABZR87_RS19435
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