Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19360 and ABZR87_RS19365 are separated by 21 nucleotidesABZR87_RS19365 and ABZR87_RS19370 overlap by 4 nucleotidesABZR87_RS19370 and ABZR87_RS19375 are separated by 10 nucleotidesABZR87_RS19375 and ABZR87_RS19380 overlap by 4 nucleotides ABZR87_RS19360: ABZR87_RS19360 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 709,911 to 711,062 _RS19360 ABZR87_RS19365: ABZR87_RS19365 - glycosyltransferase, at 711,084 to 712,409 _RS19365 ABZR87_RS19370: ABZR87_RS19370 - hypothetical protein, at 712,406 to 713,449 _RS19370 ABZR87_RS19375: ABZR87_RS19375 - hypothetical protein, at 713,460 to 714,446 _RS19375 ABZR87_RS19380: ABZR87_RS19380 - polysaccharide deacetylase family protein, at 714,443 to 716,293 _RS19380
Group Condition ABZR87_RS19360 ABZR87_RS19365 ABZR87_RS19370 ABZR87_RS19375 ABZR87_RS19380
soil soil EcoFAB sample 1; outgrowth in LB -1.3 +0.3 -0.1 -1.2 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 -0.2 -0.8 -1.0 +0.1
root root sample 6; outgrowth in LB -0.5 +0.2 -0.6 -0.1 -0.5
carbon source D-Xylose (C) -0.2 -0.3 -0.6 -0.1 -0.1
root root EcoFAB sample 1; outgrowth in LB -0.1 -0.4 -0.6 -0.2 +0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 +0.4 -1.5 -0.2 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.3 -0.5 -0.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.8 -1.5 +0.4 -0.3
root root sample 5; outgrowth in LB -0.1 +0.5 -0.7 -0.8 +0.2
carbon source Octanoic (C) +0.2 -0.2 -0.2 -0.5 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 -0.2 -0.1 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 -0.3 -0.6 +0.2
carbon source L-Glutamic (C) +0.1 +0.2 +0.1 -0.8 +0.1
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.0 +0.2 -0.8 +0.1
soil soil sample 5; outgrowth in LB -0.2 +0.2 +0.2 -0.5 +0.2
carbon source Azelaic (C) +0.5 -0.5 +0.3 -0.4 +0.0
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.5 +0.8 -0.0 +0.2
nitrogen source nitrogen source nitrate 20mM +0.3 -0.3 +0.5 -0.3 -0.0
nitrogen source nitrogen source nitrite 5mM -0.0 -0.5 +0.8 -0.0 +0.1
carbon source acetate (C) +0.2 +0.3 -0.5 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.8 -0.7 +0.4 -0.4
soil soil sample 4; outgrowth in LB +0.1 -0.3 +0.9 -0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.0 +0.6 -0.2 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 +0.3 -0.5 +0.2
carbon source Sebacic (C) +0.1 +0.2 -0.3 +0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.3 +0.2 +0.4 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.2 +0.3 +0.6 +0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.2 +0.3 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.4 -0.3 +0.0 +0.0 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.0 +0.4 +1.1 +0.1
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ABZR87_RS19360
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ABZR87_RS19365
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ABZR87_RS19375
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ABZR87_RS19380
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