Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS19225 and ABZR87_RS19230 are separated by 7 nucleotidesABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotidesABZR87_RS19235 and ABZR87_RS19240 overlap by 4 nucleotidesABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotides ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430 _RS19225 ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935 _RS19230 ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681 _RS19235 ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364 _RS19240 ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917 _RS19245
Group Condition ABZR87_RS19225 ABZR87_RS19230 ABZR87_RS19235 ABZR87_RS19240 ABZR87_RS19245
carbon source D-Xylose (C) -0.1 -0.0 -0.5 -0.2 -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 -0.3 -0.4 -0.5 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.6 +0.0 -0.4 -0.1 -0.2
nitrogen source nitrogen source nitrate 20mM +0.3 +0.2 -1.0 -1.0 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -0.0 -0.6 -0.5 +0.0
nitrogen source nitrogen source nitrate 20mM +0.5 +0.2 -0.6 -1.1 +0.1
phage Ra1_0.1 -0.3 -0.6 -0.1 -0.2 +0.2
root root sample 6; outgrowth in LB -0.4 -0.5 -0.7 -0.0 +0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.1 +0.2 -0.1 -0.6
soil soil EcoFAB sample 2; outgrowth in LB +0.0 -0.8 -0.3 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.6 -0.2 +0.7 -0.1
carbon source Azelaic (C) -0.4 -0.0 -0.2 -0.2 +0.3
phage Ra3_1 -0.2 -0.4 -0.2 +0.1 +0.4
nitrogen source nitrogen source nitrite 0.5mM +0.2 +0.3 -0.2 -0.5 -0.1
root root EcoFAB sample 2; outgrowth in LB -0.6 -0.7 +0.3 +0.1 +0.6
nitrogen source nitrogen source nitrate 5mM +0.5 +0.4 -0.3 -0.9 +0.1
root root EcoFAB sample 1; outgrowth in LB -0.4 +0.5 -0.2 +0.0 -0.0
nitrogen source nitrogen source nitrite 1mM +0.4 -0.2 +0.3 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.5 +0.4 +0.4 -0.9
soil soil EcoFAB sample 1; outgrowth in LB -0.1 +0.2 +0.5 -0.3 -0.1
carbon source L-Glutamic (C) +0.1 +0.1 -0.6 +0.3 +0.5
rhizosphere rhizosphere sample 5; outgrowth in LB -0.4 +0.3 +0.1 +0.2 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.1 +0.4 +0.2 +0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.5 +1.3 -0.2 +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.3 +0.2 +0.2 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.2 -0.0 +0.7 +0.9
root root sample 5; outgrowth in LB -0.5 +0.4 +0.0 +0.9 -0.0
carbon source Sebacic (C) -0.3 +0.6 +0.6 -0.3 +0.2
carbon source Octanoic (C) -0.2 +0.3 +0.3 +0.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 +0.3 +0.2 +0.1
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ABZR87_RS19230
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ABZR87_RS19245
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