Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotidesABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotidesABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotidesABZR87_RS18840 and ABZR87_RS18845 are separated by 15 nucleotides ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022 _RS18825 ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335 _RS18830 ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453 _RS18835 ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838 _RS18840 ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414 _RS18845
Group Condition ABZR87_RS18825 ABZR87_RS18830 ABZR87_RS18835 ABZR87_RS18840 ABZR87_RS18845
carbon source Octanoic (C) +0.3 -0.0 -1.9 -1.7 -0.7
carbon source Octanoic (C) +0.1 +0.1 -1.8 -1.1 -0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.3 +0.4 -1.0 -0.6 -0.2
micoeukaryotes C.elegans, mixed culture-2 -0.3 +0.4 -0.7 -1.0 +0.2
micoeukaryotes C.elegans, mixed culture-1 +0.2 +0.4 -0.9 -0.9 -0.1
carbon source Heptanoic (C) -0.1 +0.2 -0.5 -0.4 -0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 -0.2 -0.4 -0.4 -0.2
carbon source L-Glutamic (C) +0.2 -1.4 -0.1 -0.0 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -0.5 +0.1 +0.1 -0.5
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.2 -0.4 -0.0 -0.3 -0.5
nitrogen source nitrogen source nitrate 20mM -0.1 -0.8 -0.0 +0.2 -0.1
carbon source Heptanoic (C) +0.0 +0.3 -0.4 -0.5 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.1 +0.5 -0.8 -0.6 +0.2
soil soil sample 3; outgrowth in LB +0.1 -0.9 +0.1 -0.1 +0.0
soil soil EcoFAB sample 2; outgrowth in LB +0.1 +0.4 -0.1 -0.8 -0.3
root root EcoFAB sample 1; outgrowth in LB +0.2 -0.9 +0.1 -0.1 +0.1
carbon source Sebacic (C) -0.2 +0.5 -0.4 -0.2 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.0 +0.5 -0.5 -0.4 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 -0.7 -0.0 +0.2 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.0 -0.5 -0.3 -0.1 +0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.2 -0.4 +0.2 +0.3
carbon source Disodium Glutarate (C) -0.0 +0.7 +0.1 -0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 -0.1 +0.4 -0.2
root root EcoFAB sample 2; outgrowth in LB -0.2 +1.0 -0.3 +0.0 +0.0
root root sample 6; outgrowth in LB +0.2 +0.6 -0.1 -0.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.8 +0.3 -0.1 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.2 +0.2 -0.1 +0.2 +0.5
control NoPredeControl -0.1 +0.3 -0.0 +0.3 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.5 +0.1 +0.3 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 -0.1 +0.4 +1.0 +0.4
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