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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS18820 and ABZR87_RS18825 are separated by 252 nucleotides
ABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotides
ABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotides
ABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotides
ABZR87_RS18820: ABZR87_RS18820 - hypothetical protein, at 574,549 to 576,651
_RS18820
ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022
_RS18825
ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335
_RS18830
ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453
_RS18835
ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838
_RS18840
Group
Condition
ABZR87
_RS18820
ABZR87
_RS18825
ABZR87
_RS18830
ABZR87
_RS18835
ABZR87
_RS18840
carbon source
Octanoic (C)
-0.1
+0.3
-0.0
-1.9
-1.7
carbon source
Octanoic (C)
-0.2
+0.1
+0.1
-1.8
-1.1
micoeukaryotes
C.elegans, mixed culture-2
-0.2
-0.3
+0.4
-0.7
-1.0
micoeukaryotes
Acanthamoeba sp., muxed culture-1
-0.3
-0.1
+0.5
-0.8
-0.6
soil
soil EcoFAB sample 1; outgrowth in LB
+0.1
-0.3
+0.4
-1.0
-0.6
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
-0.3
+0.0
-0.2
-0.4
-0.4
rhizosphere
rhizosphere sample 3; outgrowth in LB
-0.9
+0.0
-0.1
-0.1
-0.1
soil
soil sample 3; outgrowth in LB
-0.3
+0.1
-0.9
+0.1
-0.1
carbon source
L-Glutamic (C)
+0.2
+0.2
-1.4
-0.1
-0.0
micoeukaryotes
Acanthamoeba sp., muxed culture-2
-0.4
-0.1
-0.0
-0.4
-0.3
micoeukaryotes
C.elegans, mixed culture-1
+0.2
+0.2
+0.4
-0.9
-0.9
carbon source
Heptanoic (C)
-0.1
-0.1
+0.2
-0.5
-0.4
carbon source
Heptanoic (C)
-0.1
+0.0
+0.3
-0.4
-0.5
carbon source
Sebacic (C)
-0.6
-0.2
+0.5
-0.4
-0.2
root
root EcoFAB sample 1; outgrowth in LB
+0.0
+0.2
-0.9
+0.1
-0.1
nitrogen source
nitrogen source nitrate 20mM
+0.2
-0.1
-0.8
-0.0
+0.2
phage
Ra1_0.01
-0.5
+0.0
-0.3
+0.2
-0.0
micoeukaryotes
Dictyostellum sp.mixed culture-1
-0.0
-0.0
+0.5
-0.5
-0.4
soil
soil EcoFAB sample 2; outgrowth in LB
+0.1
+0.1
+0.4
-0.1
-0.8
root
root sample 4; outgrowth in LB
+0.2
+0.2
-0.6
+0.1
-0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.4
+0.0
-0.6
-0.1
+0.4
root
root sample 6; outgrowth in LB
-0.0
+0.2
+0.6
-0.1
-0.4
soil
soil sample 9; outgrowth in LB
-0.2
+0.1
+0.6
+0.0
-0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
+0.1
-0.1
+0.4
+0.4
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
+0.2
+0.5
-0.0
+0.2
root
root EcoFAB sample 2; outgrowth in LB
+0.2
-0.2
+1.0
-0.3
+0.0
carbon source
Azelaic (C)
+0.2
-0.1
+0.5
-0.0
+0.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
+0.2
+0.8
+0.3
-0.1
micoeukaryotes
Dictyostellum sp.mixed culture-2
-0.0
+0.1
-0.1
+0.4
+1.0
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.4
+0.4
+0.5
+0.1
+0.3
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