Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18775 and ABZR87_RS18780 are separated by 457 nucleotidesABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotidesABZR87_RS18785 and ABZR87_RS18790 are separated by 127 nucleotidesABZR87_RS18790 and ABZR87_RS18795 are separated by 90 nucleotides ABZR87_RS18775: ABZR87_RS18775 - hypothetical protein, at 566,126 to 566,257 _RS18775 ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861 _RS18780 ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632 _RS18785 ABZR87_RS18790: ABZR87_RS18790 - LysR family transcriptional regulator, at 567,760 to 568,707 _RS18790 ABZR87_RS18795: ABZR87_RS18795 - MDR family MFS transporter, at 568,798 to 570,390 _RS18795
Group Condition ABZR87_RS18775 ABZR87_RS18780 ABZR87_RS18785 ABZR87_RS18790 ABZR87_RS18795
soil soil EcoFAB sample 1; outgrowth in LB -1.6 N.D. -0.0 -0.1 +0.0
carbon source 4-Hydroxybenzoic Acid (C) -1.0 N.D. +0.0 -0.1 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.4 N.D. -0.2 -0.2 +0.1
root root sample 6; outgrowth in LB -0.4 N.D. -0.1 -0.0 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 N.D. -0.3 -0.1 +0.2
carbon source Octanoic (C) -0.4 N.D. -0.0 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 N.D. -0.4 +0.3 -0.0
root root EcoFAB sample 1; outgrowth in LB -0.4 N.D. -0.3 +0.1 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 N.D. -0.2 +0.0 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 N.D. +0.1 -0.4 +0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.6 N.D. -0.0 +0.1 +0.2
carbon source Disodium Glutarate (C) -0.4 N.D. +0.0 -0.1 +0.1
root root EcoFAB sample 2; outgrowth in LB -0.2 N.D. -0.1 -0.2 +0.2
root root sample 4; outgrowth in LB -0.3 N.D. +0.1 -0.1 +0.2
phage Ra1_0.1 +0.5 N.D. -0.1 -0.3 -0.1
carbon source Dodecandioic (C) +0.2 N.D. -0.3 +0.0 +0.2
rhizosphere rhizosphere sample 6; outgrowth in LB -0.4 N.D. +0.2 +0.2 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 N.D. -0.2 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. +0.2 -0.1 +0.2
soil soil sample 1; outgrowth in LB -0.3 N.D. +0.0 +0.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 N.D. +0.3 +0.1 -0.0
carbon source Octanoic (C) -0.2 N.D. +0.3 -0.2 +0.3
carbon source Sebacic (C) +0.4 N.D. -0.3 -0.0 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 N.D. +0.4 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 N.D. +0.3 -0.0 +0.3
nitrogen source nitrogen source nitrate 5mM +0.4 N.D. +0.1 -0.1 +0.1
nitrogen source nitrogen source nitrate 5mM +0.2 N.D. -0.1 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. +0.2 +0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. +0.2 +0.0 +0.1
root root sample 5; outgrowth in LB +0.4 N.D. +0.1 +0.1 +0.4
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