Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18650 and ABZR87_RS18655 are separated by 81 nucleotidesABZR87_RS18655 and ABZR87_RS18660 overlap by 4 nucleotidesABZR87_RS18660 and ABZR87_RS18665 are separated by 68 nucleotidesABZR87_RS18665 and ABZR87_RS18670 are separated by 33 nucleotides ABZR87_RS18650: ABZR87_RS18650 - YnfA family protein, at 537,591 to 537,923 _RS18650 ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952 _RS18655 ABZR87_RS18660: ABZR87_RS18660 - xylulokinase, at 538,949 to 540,457 _RS18660 ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944 _RS18665 ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096 _RS18670
Group Condition ABZR87_RS18650 ABZR87_RS18655 ABZR87_RS18660 ABZR87_RS18665 ABZR87_RS18670
root root EcoFAB sample 1; outgrowth in LB +0.0 -0.5 -0.5 -0.1 -0.5
carbon source Azelaic (C) +0.0 -1.3 +0.1 -0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.5 -0.0 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.4 +0.1 -1.0 -0.3
root root sample 6; outgrowth in LB -0.5 -0.4 +0.2 -0.5 -0.1
root root sample 4; outgrowth in LB -0.1 -0.6 +0.1 -0.1 -0.4
carbon source Protocatechuic Acid (C) +0.1 -0.8 +0.1 +0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.5 +0.3 -0.3 -0.0
soil soil sample 4; outgrowth in LB -0.1 -0.4 +0.1 -0.4 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.8 +0.1 -0.4 +0.4
carbon source L-Glutamic (C) -0.2 -0.6 +0.2 -0.1 +0.2
carbon source Octanoic (C) -0.0 -1.2 +0.0 -0.0 +0.8
carbon source Sebacic (C) -0.3 +0.1 -0.1 +0.5 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.3 -0.1 -0.3 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 +0.3 +0.1 -0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.4 -0.8 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 +0.4 -0.4 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 +0.9 -0.3 -0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.4 -0.5 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.5 -0.5 -0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +0.5 +0.1 -0.4 +0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.1 +0.1 +0.3 +0.5 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 +0.4 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 +0.5 -0.7 +0.9
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 +0.4 +0.2 -0.2 +0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.1 +0.2 -0.2 +0.4 +0.2
root root sample 5; outgrowth in LB +0.3 +0.5 +0.0 -0.6 +0.7
nitrogen source nitrogen source nitrate 20mM +0.2 +0.4 +0.3 +0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.1 +1.1 +0.4 +0.3 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +1.0 +0.3 +0.6 -0.1
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