Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18635 and ABZR87_RS18640 are separated by 29 nucleotidesABZR87_RS18640 and ABZR87_RS18645 are separated by 100 nucleotidesABZR87_RS18645 and ABZR87_RS18650 are separated by 141 nucleotidesABZR87_RS18650 and ABZR87_RS18655 are separated by 81 nucleotides ABZR87_RS18635: ABZR87_RS18635 - multidrug transporter subunit MdtD, at 533,412 to 534,842 _RS18635 ABZR87_RS18640: ABZR87_RS18640 - ATP-dependent helicase, at 534,872 to 537,022 _RS18640 ABZR87_RS18645: ABZR87_RS18645 - hypothetical protein, at 537,123 to 537,449 _RS18645 ABZR87_RS18650: ABZR87_RS18650 - YnfA family protein, at 537,591 to 537,923 _RS18650 ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952 _RS18655
Group Condition ABZR87_RS18635 ABZR87_RS18640 ABZR87_RS18645 ABZR87_RS18650 ABZR87_RS18655
rhizosphere rhizosphere sample 3; outgrowth in LB -1.2 +0.0 N.D. -0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +0.2 N.D. -0.2 -0.5
carbon source Azelaic (C) +0.2 +0.0 N.D. +0.0 -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.0 N.D. -0.1 -0.5
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.5 N.D. +0.1 -0.8
root root sample 4; outgrowth in LB +0.2 -0.3 N.D. -0.1 -0.6
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.3 N.D. -0.0 -0.5
phage Ra3_1 -0.5 -0.1 N.D. -0.1 +0.3
carbon source L-Glutamic (C) +0.4 +0.1 N.D. -0.2 -0.6
carbon source Protocatechuic Acid (C) -0.4 -0.1 N.D. -0.1 +0.3
carbon source Pimelic (C) -0.2 +0.1 N.D. +0.3 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.5 N.D. +0.2 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 +0.3 N.D. -0.1 +0.4
carbon source Sebacic (C) +0.5 -0.2 N.D. -0.3 +0.1
carbon source Protocatechuic Acid (C) +0.5 +0.2 N.D. +0.1 -0.8
root root sample 6; outgrowth in LB +0.7 +0.3 N.D. -0.5 -0.4
carbon source 1,2-Propanediol (C) -0.3 +0.1 N.D. +0.0 +0.5
carbon source Protocatechuic Acid (C) -0.3 +0.1 N.D. -0.0 +0.5
carbon source Octanoic (C) +1.4 +0.2 N.D. -0.0 -1.2
carbon source Octanoic (C) +0.8 +0.0 N.D. -0.1 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.5 +0.2 N.D. -0.2 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.1 N.D. -0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.3 N.D. -0.2 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB +0.5 -0.1 N.D. +0.0 +0.4
carbon source Dodecandioic (C) +0.6 -0.1 N.D. +0.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.4 +0.2 N.D. -0.0 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.4 +0.3 N.D. -0.1 +0.3
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.2 N.D. -0.1 +1.1
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.1 N.D. +0.1 +0.6
carbon source 4-Hydroxybenzoic Acid (C) +0.8 +0.0 N.D. -0.1 +1.0
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