Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18610 and ABZR87_RS18615 overlap by 4 nucleotidesABZR87_RS18615 and ABZR87_RS18620 overlap by 4 nucleotidesABZR87_RS18620 and ABZR87_RS18625 are separated by 1 nucleotidesABZR87_RS18625 and ABZR87_RS18630 are separated by 101 nucleotides ABZR87_RS18610: ABZR87_RS18610 - DUF4178 domain-containing protein, at 528,631 to 530,079 _RS18610 ABZR87_RS18615: ABZR87_RS18615 - hypothetical protein, at 530,076 to 530,264 _RS18615 ABZR87_RS18620: ABZR87_RS18620 - adenosylmethionine decarboxylase, at 530,261 to 530,686 _RS18620 ABZR87_RS18625: ABZR87_RS18625 - sensor domain-containing diguanylate cyclase, at 530,688 to 531,734 _RS18625 ABZR87_RS18630: ABZR87_RS18630 - class II fumarate hydratase, at 531,836 to 533,221 _RS18630
Group Condition ABZR87_RS18610 ABZR87_RS18615 ABZR87_RS18620 ABZR87_RS18625 ABZR87_RS18630
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 +0.1 -1.1 +0.2 -4.3
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.1 -0.7 +0.2 -1.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.5 -0.9 +0.3 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.2 -0.0 -0.1 -2.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.0 -0.1 -0.0 -1.8
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.0 -0.3 -0.3 -0.2 -1.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 +0.0 -1.0 -0.1 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.0 -0.0 -0.3 +0.2 -1.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 +0.0 +0.5 -1.9
nitrogen source nitrogen source nitrite 0.5mM +0.0 -0.0 -0.1 -0.0 -1.3
rhizosphere rhizosphere sample 6; outgrowth in LB -0.2 +0.2 -0.5 -0.0 -0.8
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 -0.3 +0.1 -0.1 -1.0
carbon source Octanoic (C) -0.1 +0.0 -1.9 -0.7 +1.3
root root sample 6; outgrowth in LB +0.1 +0.1 -0.5 +0.4 -1.3
carbon source Azelaic (C) -0.1 +0.2 +0.4 -0.1 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 -0.3 -0.8 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.4 +0.1 +0.4 -0.0 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 +0.0 +0.3 -1.1
carbon source Protocatechuic Acid (C) -0.1 +0.0 +0.5 -0.4 -0.6
micoeukaryotes C.elegans, mixed culture-1 -0.0 -0.0 -0.6 +0.5 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 +0.3 +0.4 -0.2 -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 +0.5 -0.6 -0.4 +0.5
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 -0.1 -0.6 -0.2 +0.7
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 +0.1 -0.4 -0.1 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +0.3 +0.4 +0.4 -1.2
carbon source Octanoic (C) +0.0 -0.5 +0.3 +0.1 +0.7
carbon source Protocatechuic Acid (C) +0.1 -0.2 +0.4 +0.2 +1.0
carbon source Dodecandioic (C) -0.1 +0.1 +0.4 +0.1 +1.0
root root sample 5; outgrowth in LB +0.4 -0.2 +1.6 +0.2 +0.6
carbon source Sebacic (C) -0.3 +0.0 +0.9 +0.1 +2.0
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ABZR87_RS18615
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