Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18590 and ABZR87_RS18595 overlap by 1 nucleotidesABZR87_RS18595 and ABZR87_RS18600 are separated by 177 nucleotidesABZR87_RS18600 and ABZR87_RS18605 are separated by 49 nucleotidesABZR87_RS18605 and ABZR87_RS18610 are separated by 88 nucleotides ABZR87_RS18590: ABZR87_RS18590 - NAD(P)/FAD-dependent oxidoreductase, at 523,674 to 525,296 _RS18590 ABZR87_RS18595: ABZR87_RS18595 - polyamine aminopropyltransferase, at 525,296 to 526,873 _RS18595 ABZR87_RS18600: ABZR87_RS18600 - DUF350 domain-containing protein, at 527,051 to 527,449 _RS18600 ABZR87_RS18605: ABZR87_RS18605 - SPFH domain-containing protein, at 527,499 to 528,542 _RS18605 ABZR87_RS18610: ABZR87_RS18610 - DUF4178 domain-containing protein, at 528,631 to 530,079 _RS18610
Group Condition ABZR87_RS18590 ABZR87_RS18595 ABZR87_RS18600 ABZR87_RS18605 ABZR87_RS18610
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 -0.9 -0.3 -0.2
carbon source Sebacic (C) +0.1 -0.2 -0.4 -0.4 -0.3
root root EcoFAB sample 2; outgrowth in LB -0.3 -0.3 -0.3 +0.2 -0.3
carbon source Octanoic (C) -0.3 -0.4 -0.6 +0.3 +0.0
carbon source Dodecandioic (C) -0.2 -0.1 -0.4 -0.1 -0.1
carbon source Valeric (C) -0.0 -0.2 -0.0 -0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -0.5 +0.1 -0.4
nitrogen source nitrogen source nitrite 5mM -0.0 -0.2 -0.6 +0.1 -0.0
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 -0.1 -0.3 +0.2 -0.2
nitrogen source nitrogen source nitrate 20mM -0.2 -0.4 -0.3 +0.2 +0.1
carbon source Protocatechuic Acid (C) -0.3 -0.1 +0.2 -0.4 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 -0.1 +0.2 -0.1 -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 +0.1 -0.2 -0.2 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 -0.1 +0.3 -0.2 -0.2
carbon source Dodecandioic (C) -0.1 -0.1 -0.4 +0.4 +0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.1 +0.3 +0.5 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 +0.0 +0.4 +0.0
nitrogen source nitrogen source nitrite 0.5mM -0.3 +0.1 -0.2 +0.4 +0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.6 +0.0 -0.2 -0.1 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.4 +0.4 +0.1 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.1 +0.3 +0.3 -0.0 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 +0.2 -0.1 +0.4 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 +0.1 +0.6 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 -0.1 +0.5 -0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 +0.5 -0.0 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 +0.2 +0.4 +0.2 -0.0
soil soil sample 1; outgrowth in LB +0.0 +0.2 +0.5 +0.2 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +0.2 +0.4 +0.6 -0.1
root root sample 5; outgrowth in LB +0.4 +0.1 +0.5 -0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.5 -0.5 +0.5 +0.8
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