Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18535 and ABZR87_RS18540 are separated by 157 nucleotidesABZR87_RS18540 and ABZR87_RS18545 are separated by 7 nucleotidesABZR87_RS18545 and ABZR87_RS18550 are separated by 302 nucleotidesABZR87_RS18550 and ABZR87_RS18555 are separated by 100 nucleotides ABZR87_RS18535: ABZR87_RS18535 - PLP-dependent aminotransferase family protein, at 513,066 to 514,619 _RS18535 ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877 _RS18540 ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697 _RS18545 ABZR87_RS18550: ABZR87_RS18550 - alkane 1-monooxygenase, at 517,000 to 518,163 _RS18550 ABZR87_RS18555: ABZR87_RS18555 - AraC family transcriptional regulator, at 518,264 to 519,163 _RS18555
Group Condition ABZR87_RS18535 ABZR87_RS18540 ABZR87_RS18545 ABZR87_RS18550 ABZR87_RS18555
soil soil EcoFAB sample 1; outgrowth in LB -0.5 -0.6 -0.9 -0.4 -0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 -1.0 -1.0 -0.1 +0.1
carbon source Dodecandioic (C) -0.1 -0.9 -0.3 +0.0 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.3 -0.6 -0.3 -0.5
carbon source Dodecandioic (C) -0.1 -1.0 -0.1 +0.1 -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 -0.4 -0.1 -0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.2 -0.3 +0.0 -0.1
soil soil sample 8; outgrowth in LB -0.1 -0.3 -0.4 +0.1 -0.3
micoeukaryotes C.elegans, mixed culture-2 +0.1 -0.5 -0.1 -0.1 -0.3
root root EcoFAB sample 1; outgrowth in LB -0.1 -0.1 -0.4 +0.1 -0.3
root root sample 6; outgrowth in LB +0.2 -0.2 -0.3 -0.1 -0.4
carbon source Hexanoic (C) +0.0 -0.7 -0.2 +0.1 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 -0.2 -0.2 -0.1 -0.4
carbon source Sebacic (C) +0.2 -0.4 -0.9 +0.1 +0.4
soil soil sample 9; outgrowth in LB -0.3 -0.1 -0.3 +0.1 +0.2
carbon source Azelaic (C) -0.1 +0.1 +0.1 +0.0 -0.7
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 -0.1 +0.5 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 -0.4 +0.2 +0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 -0.7 +0.4 -0.2 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 -0.3 -0.1 +0.1 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.2 -0.4 +0.3 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 +0.1 -0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.2 -0.1 -0.2 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.1 -0.3 +0.5 -0.1 +0.2
nitrogen source nitrogen source nitrate 5mM -0.2 -0.1 +0.2 +0.1 +0.6
root root sample 5; outgrowth in LB -0.4 -0.2 +0.7 -0.3 +1.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.3 +0.3 -0.4 +1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 -0.4 -0.1 +0.9
carbon source Octanoic (C) +0.1 +0.5 +0.4 +0.0 -0.2
carbon source Octanoic (C) +0.0 +1.0 +0.4 -0.2 +0.4
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