Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotidesABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotidesABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotidesABZR87_RS18465 and ABZR87_RS18470 are separated by 37 nucleotides ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651 _RS18450 ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477 _RS18455 ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944 _RS18460 ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526 _RS18465 ABZR87_RS18470: ABZR87_RS18470 - lipocalin-like domain-containing protein, at 502,564 to 502,989 _RS18470
Group Condition ABZR87_RS18450 ABZR87_RS18455 ABZR87_RS18460 ABZR87_RS18465 ABZR87_RS18470
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 -0.0 -0.5 -0.7
phage Ra1_0.1 -0.1 -0.7 -0.0 -0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -0.3 -0.5 -0.5
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.3 +0.1 -0.1 -0.7 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.2 -0.5 -0.1 -0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 -0.3 -0.3 -0.3
carbon source Sebacic (C) -0.4 +0.2 -0.2 -0.9 +0.5
carbon source Sebacic (C) -0.1 -0.3 -0.3 +0.4 -0.2
root root EcoFAB sample 2; outgrowth in LB -0.4 -0.1 +0.2 -0.3 +0.2
root root sample 4; outgrowth in LB -0.2 -0.1 +0.1 +0.2 -0.4
carbon source Protocatechuic Acid (C) +0.3 -0.7 -0.0 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.6 -0.4 +0.7 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.6 -0.1 +0.4 +0.6
root root sample 5; outgrowth in LB +0.2 -0.6 -0.4 +0.3 +0.3
rhizosphere rhizosphere sample 6; outgrowth in LB -0.2 +0.2 +0.3 -0.2 -0.3
soil soil sample 6; outgrowth in LB -0.1 +0.3 -0.0 +0.3 -0.4
carbon source Azelaic (C) +0.4 +0.3 -0.3 +0.5 -0.7
rhizosphere rhizosphere sample 4; outgrowth in LB -0.0 -0.5 -0.1 +0.5 +0.3
nitrogen source nitrogen source nitrate 5mM -0.2 +0.3 -0.0 +0.7 -0.5
carbon source Octanoic (C) +0.3 +0.6 -0.5 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.0 +0.8 -0.6
carbon source D-Glucose (C) +0.3 -0.2 -0.2 +0.0 +0.6
carbon source acetate (C) +0.1 +0.3 -0.2 +0.4 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.5 -0.3 +0.2 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 -0.1 +0.3 +0.4
phage Ra1_0.01 -0.2 -0.0 +0.2 +0.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 +0.1 +0.5 +0.5
root root sample 6; outgrowth in LB +0.3 +0.0 +0.2 -0.0 +0.8
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 +0.5 +0.1 +0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +1.2 +0.3 +0.3 +1.1
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