Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18330 and ABZR87_RS18335 overlap by 4 nucleotidesABZR87_RS18335 and ABZR87_RS18340 are separated by 217 nucleotidesABZR87_RS18340 and ABZR87_RS18345 are separated by 278 nucleotidesABZR87_RS18345 and ABZR87_RS18350 are separated by 99 nucleotides ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783 _RS18330 ABZR87_RS18335: ABZR87_RS18335 - GntR family transcriptional regulator, at 479,780 to 480,565 _RS18335 ABZR87_RS18340: ABZR87_RS18340 - helix-turn-helix domain-containing protein, at 480,783 to 481,718 _RS18340 ABZR87_RS18345: ABZR87_RS18345 - ABC transporter substrate-binding protein, at 481,997 to 482,983 _RS18345 ABZR87_RS18350: ABZR87_RS18350 - sugar ABC transporter ATP-binding protein, at 483,083 to 484,672 _RS18350
Group Condition ABZR87_RS18330 ABZR87_RS18335 ABZR87_RS18340 ABZR87_RS18345 ABZR87_RS18350
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -1.0 -0.3 -0.2 -0.7
carbon source Sebacic (C) +0.1 +0.2 -0.2 -1.3 -0.3
micoeukaryotes C.elegans, mixed culture-2 +0.0 -0.9 -0.4 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.0 +0.0 +0.0 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -1.1 +0.4 -0.4 +0.0
carbon source Pimelic (C) +0.1 -1.0 -0.1 +0.1 +0.2
nitrogen source nitrogen source nitrite 0.5mM -0.1 -1.1 +0.4 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -0.2 -0.8 +0.3
nitrogen source nitrogen source nitrate 5mM -0.1 -0.6 +0.5 -0.2 -0.3
root root sample 6; outgrowth in LB +0.1 -1.2 +0.6 -0.6 +0.4
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 -1.2 +0.5 -0.4 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.8 +0.4 -0.0 +1.0
carbon source Octanoic (C) +0.0 +0.7 -0.3 -0.6 -0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -0.5 +0.9 -0.0 -0.7
root root EcoFAB sample 2; outgrowth in LB +0.1 -1.5 +0.5 +0.3 +0.4
rhizosphere rhizosphere sample 7; outgrowth in LB +0.0 -0.8 +0.6 -0.0 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 -0.7 -0.2 +0.7 -0.1
carbon source Dodecandioic (C) -0.0 +0.8 -0.2 -0.1 -0.5
carbon source Protocatechuic Acid (C) +0.1 +0.7 +0.2 -0.1 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -1.1 +0.5 +0.5 +0.6
soil soil sample 8; outgrowth in LB +0.1 -0.5 +0.3 +0.3 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.3 +0.5 +0.4 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 +0.2 -0.6 +0.2 +0.8
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 -0.4 +0.9 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.6 +1.0 -0.2 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.5 +0.2 +0.9 -0.1
carbon source D-Galactose (C) -0.0 -0.1 +0.1 +0.6 +0.9
carbon source D-Galactose (C) +0.0 +0.1 +0.1 +0.6 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.8 +0.9 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +1.6 +0.6 +0.1 -0.3
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ABZR87_RS18335
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