Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotidesABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotidesABZR87_RS18220 and ABZR87_RS18225 are separated by 81 nucleotidesABZR87_RS18225 and ABZR87_RS18230 overlap by 4 nucleotides ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866 _RS18215 ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165 _RS18220 ABZR87_RS18225: ABZR87_RS18225 - D-xylose ABC transporter ATP-binding protein, at 459,247 to 460,830 _RS18225 ABZR87_RS18230: ABZR87_RS18230 - sugar ABC transporter permease, at 460,827 to 462,029 _RS18230
Group Condition ABZR87_RS18210 ABZR87_RS18215 ABZR87_RS18220 ABZR87_RS18225 ABZR87_RS18230
carbon source D-Xylose (C) +0.2 -1.4 -1.9 -1.7 -1.3
carbon source D-Xylose (C) -0.0 -1.6 -1.3 -1.4 -1.7
carbon source D-Xylose (C) +0.3 -1.6 -1.0 -1.4 -1.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 -0.6 -0.0 -0.6 -0.3
root root sample 6; outgrowth in LB -0.3 +0.3 -0.7 -0.3 -0.9
soil soil EcoFAB sample 1; outgrowth in LB -0.8 +0.1 +0.0 -0.2 -0.9
root root EcoFAB sample 2; outgrowth in LB -0.2 +0.1 -0.1 -0.5 -0.7
root root sample 4; outgrowth in LB +0.2 -0.3 -0.2 -0.2 -0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.7 +0.0 -0.4 -0.1 +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 +0.3 -0.3 -0.3 -0.6
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 +0.4 +0.1 -0.2 -1.0
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.1 -0.4 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 -0.2 +0.0 -0.9
rhizosphere rhizosphere sample 4; outgrowth in LB +0.4 -0.0 -0.5 -0.1 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 +0.8 -0.1 -0.3 -0.9
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.2 -0.0 -0.2 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 +0.4 -0.2 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.4 +0.0 +0.2 -0.3 -0.4
rhizosphere rhizosphere sample 9; outgrowth in LB +0.5 +0.2 -0.1 +0.2 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.5 +0.1 -0.1 +0.4
carbon source Octanoic (C) -0.3 +0.3 +0.3 +0.5 -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.5 +0.1 -0.4 -0.4 +0.5
root root sample 5; outgrowth in LB +1.0 +0.1 -0.4 -0.1 +0.0
nitrogen source nitrogen source nitrate 20mM +0.2 -0.4 +0.3 +0.3 +0.3
carbon source Protocatechuic Acid (C) +0.4 -0.2 +0.4 -0.0 +0.1
carbon source Octanoic (C) +0.2 -0.5 +0.1 +0.6 +0.6
carbon source Protocatechuic Acid (C) +0.7 -0.2 +0.2 +0.0 +0.4
carbon source Azelaic (C) +0.3 +0.1 +0.4 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.0 +0.5 -0.2 +0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +0.8 +0.2 -0.0 +0.5
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ABZR87_RS18210
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ABZR87_RS18215
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ABZR87_RS18225
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ABZR87_RS18230
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