Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS18205 and ABZR87_RS18210 are separated by 27 nucleotidesABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotidesABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotidesABZR87_RS18220 and ABZR87_RS18225 are separated by 81 nucleotides ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536 _RS18205 ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866 _RS18215 ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165 _RS18220 ABZR87_RS18225: ABZR87_RS18225 - D-xylose ABC transporter ATP-binding protein, at 459,247 to 460,830 _RS18225
Group Condition ABZR87_RS18205 ABZR87_RS18210 ABZR87_RS18215 ABZR87_RS18220 ABZR87_RS18225
carbon source D-Xylose (C) +0.1 +0.2 -1.4 -1.9 -1.7
carbon source D-Xylose (C) -0.1 -0.0 -1.6 -1.3 -1.4
carbon source D-Xylose (C) +0.1 +0.3 -1.6 -1.0 -1.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.4 -0.6 -0.0 -0.6
root root sample 6; outgrowth in LB -0.1 -0.3 +0.3 -0.7 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.2 +0.1 -0.1 -0.4 -0.3
soil soil EcoFAB sample 1; outgrowth in LB -0.1 -0.8 +0.1 +0.0 -0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.4 -0.7 +0.0 -0.4 -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB +0.0 +0.4 -0.0 -0.5 -0.1
root root sample 4; outgrowth in LB +0.3 +0.2 -0.3 -0.2 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 +0.1 +0.3 -0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.4 +0.2 -0.1 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 +0.5 +0.1 -0.4 -0.4
soil soil sample 8; outgrowth in LB +0.2 +0.1 +0.2 -0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.1 +0.4 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.2 +0.0 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 -0.5 +0.1 -0.1
carbon source Octanoic (C) -0.2 +0.2 -0.5 +0.1 +0.6
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 -0.0 +0.8 -0.1 -0.3
carbon source Sebacic (C) +0.4 -0.1 -0.1 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.4 +0.0 +0.5 -0.2
root root sample 5; outgrowth in LB -0.0 +1.0 +0.1 -0.4 -0.1
nitrogen source nitrogen source nitrate 20mM +0.2 +0.2 -0.4 +0.3 +0.3
carbon source Protocatechuic Acid (C) -0.0 +0.7 -0.2 +0.2 +0.0
root root EcoFAB sample 1; outgrowth in LB +0.4 +0.4 +0.0 +0.2 -0.3
carbon source Protocatechuic Acid (C) +0.1 +0.4 -0.2 +0.4 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 +0.5 +0.2 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 +0.0 +0.3 +0.1
carbon source Octanoic (C) +0.5 -0.3 +0.3 +0.3 +0.5
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +1.0 +0.8 +0.2 -0.0
remove
ABZR87_RS18205
plot		 remove
ABZR87_RS18210
plot		 remove
ABZR87_RS18215		 remove
ABZR87_RS18220
plot		 remove
ABZR87_RS18225
plot