Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS18200 and ABZR87_RS18205 are separated by 347 nucleotidesABZR87_RS18205 and ABZR87_RS18210 are separated by 27 nucleotidesABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotidesABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotides ABZR87_RS18200: ABZR87_RS18200 - hypothetical protein, at 452,694 to 453,761 _RS18200 ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536 _RS18205 ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866 _RS18215 ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165 _RS18220
Group Condition ABZR87_RS18200 ABZR87_RS18205 ABZR87_RS18210 ABZR87_RS18215 ABZR87_RS18220
carbon source D-Xylose (C) -0.2 +0.1 +0.2 -1.4 -1.9
carbon source D-Xylose (C) -0.1 -0.1 -0.0 -1.6 -1.3
carbon source D-Xylose (C) +0.0 +0.1 +0.3 -1.6 -1.0
carbon source Octanoic (C) -1.1 -0.2 +0.2 -0.5 +0.1
root root sample 6; outgrowth in LB -0.7 -0.1 -0.3 +0.3 -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB +0.0 -0.1 -0.4 -0.6 -0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.1 -0.1 -0.8 +0.1 +0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.4 -0.7 +0.0 -0.4
carbon source Sebacic (C) -0.5 +0.4 -0.1 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 +0.2 -0.3 -0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.4 -0.2 +0.1 -0.1 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 -0.3 -0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.5 +0.4 +0.2 -0.1
nitrogen source nitrogen source nitrate 20mM -0.3 +0.2 +0.2 -0.4 +0.3
root root sample 4; outgrowth in LB +0.0 +0.3 +0.2 -0.3 -0.2
rhizosphere rhizosphere sample 4; outgrowth in LB +0.3 +0.0 +0.4 -0.0 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -0.0 +0.5 +0.1 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 -0.3 -0.2 +0.0 +0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 -0.0 -0.0 +0.8 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.5 +0.2 -0.5 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.3 +0.1 +0.1 +0.3 -0.3
carbon source Protocatechuic Acid (C) -0.1 -0.0 +0.7 -0.2 +0.2
carbon source Protocatechuic Acid (C) -0.2 +0.1 +0.4 -0.2 +0.4
root root sample 5; outgrowth in LB -0.1 -0.0 +1.0 +0.1 -0.4
carbon source Azelaic (C) -0.2 +0.1 +0.3 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 +0.4 +0.0 +0.5
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 +0.2 +0.5 +0.2 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.4 +0.4 +0.0 +0.2
carbon source Octanoic (C) +0.5 +0.5 -0.3 +0.3 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 +1.0 +0.8 +0.2
remove
ABZR87_RS18200
plot		 remove
ABZR87_RS18205
plot		 remove
ABZR87_RS18210		 remove
ABZR87_RS18215
plot		 remove
ABZR87_RS18220
plot