Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18130 and ABZR87_RS18135 are separated by 296 nucleotidesABZR87_RS18135 and ABZR87_RS18140 overlap by 8 nucleotidesABZR87_RS18140 and ABZR87_RS18145 are separated by 24 nucleotidesABZR87_RS18145 and ABZR87_RS18150 are separated by 110 nucleotides ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220 _RS18130 ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680 _RS18135 ABZR87_RS18140: ABZR87_RS18140 - type III secretion system export apparatus subunit SctR, at 433,673 to 434,332 _RS18140 ABZR87_RS18145: ABZR87_RS18145 - lytic transglycosylase domain-containing protein, at 434,357 to 435,109 _RS18145 ABZR87_RS18150: ABZR87_RS18150 - LuxR family transcriptional regulator, at 435,220 to 436,107 _RS18150
Group Condition ABZR87_RS18130 ABZR87_RS18135 ABZR87_RS18140 ABZR87_RS18145 ABZR87_RS18150
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 N.D. -3.6 +0.1 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.7 N.D. -1.0 -1.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. -1.7 -0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. -1.7 -0.0 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.3 N.D. -2.3 +0.9 +0.2
soil soil sample 4; outgrowth in LB -0.1 N.D. -0.1 -1.1 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 N.D. -0.4 -0.5 -0.2
carbon source D-Glucose (C) -0.0 N.D. -0.4 -0.7 +0.1
carbon source Octanoic (C) -0.6 N.D. -0.7 +0.7 -0.3
rhizosphere rhizosphere sample 6; outgrowth in LB -0.1 N.D. -0.5 -0.4 +0.2
root root EcoFAB sample 2; outgrowth in LB -0.5 N.D. +0.4 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 N.D. +1.1 -0.7 -0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.3 N.D. -0.8 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. -0.3 -0.7 +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.3 N.D. -0.8 +0.2 -0.3
micoeukaryotes C.elegans, mixed culture-2 +0.3 N.D. -0.8 -0.0 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.5 -0.4 -0.4
root root sample 6; outgrowth in LB -0.7 N.D. +0.1 +0.3 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.3 N.D. -0.4 +0.2 +0.4
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 N.D. -0.5 +0.5 +0.3
root root sample 5; outgrowth in LB -0.4 N.D. -0.6 +1.1 -0.1
soil soil sample 1; outgrowth in LB -0.1 N.D. +1.0 -0.3 -0.3
carbon source butyrate (C) -0.2 N.D. +0.7 +0.4 -0.5
carbon source propionate (C) -0.3 N.D. +0.6 +0.3 -0.1
nitrogen source nitrogen source nitrate 20mM +0.1 N.D. +0.7 -0.3 -0.1
carbon source Protocatechuic Acid (C) -0.3 N.D. +0.3 +0.5 +0.2
carbon source Octanoic (C) -0.5 N.D. +0.9 +0.7 +0.3
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 N.D. +0.5 +0.9 +0.1
nitrogen source nitrogen source nitrite 0.5mM +0.5 N.D. +1.1 -0.2 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. +1.5 +2.2 -0.1
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