Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18115 and ABZR87_RS18120 overlap by 26 nucleotidesABZR87_RS18120 and ABZR87_RS18125 are separated by 38 nucleotidesABZR87_RS18125 and ABZR87_RS18130 overlap by 1 nucleotidesABZR87_RS18130 and ABZR87_RS18135 are separated by 296 nucleotides ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856 _RS18115 ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708 _RS18120 ABZR87_RS18125: ABZR87_RS18125 - flagellar biosynthetic protein FliQ, at 429,747 to 430,025 _RS18125 ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220 _RS18130 ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680 _RS18135
Group Condition ABZR87_RS18115 ABZR87_RS18120 ABZR87_RS18125 ABZR87_RS18130 ABZR87_RS18135
root root EcoFAB sample 2; outgrowth in LB -0.3 -0.5 N.D. -0.5 N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.5 -0.5 N.D. -0.3 N.D.
root root sample 6; outgrowth in LB +0.1 -0.5 N.D. -0.7 N.D.
carbon source Octanoic (C) -0.2 -0.2 N.D. -0.6 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.0 -0.1 N.D. -0.7 N.D.
nitrogen source nitrogen source nitrate 20mM -0.7 -0.2 N.D. +0.1 N.D.
root root sample 5; outgrowth in LB +0.0 -0.4 N.D. -0.4 N.D.
nitrogen source nitrogen source nitrite 5mM -0.3 -0.2 N.D. -0.1 N.D.
carbon source Pimelic (C) -0.1 -0.2 N.D. -0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.0 N.D. -0.3 N.D.
carbon source butyrate (C) -0.3 -0.1 N.D. -0.2 N.D.
carbon source D-Glucose (C) -0.2 -0.2 N.D. -0.2 N.D.
carbon source Sebacic (C) -0.2 +0.0 N.D. -0.3 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.2 N.D. -0.4 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 +0.2 N.D. -0.3 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 -0.2 N.D. +0.2 N.D.
carbon source Octanoic (C) -0.0 +0.3 N.D. -0.5 N.D.
carbon source L-Glutamic (C) +0.2 -0.2 N.D. -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.3 N.D. -0.4 N.D.
nitrogen source nitrogen source nitrate 5mM -0.2 -0.2 N.D. +0.2 N.D.
root root sample 4; outgrowth in LB +0.3 -0.2 N.D. -0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 +0.3 N.D. -0.1 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.2 N.D. -0.6 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.1 +0.3 N.D. -0.2 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.0 -0.3 N.D. +0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.1 N.D. +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 N.D. -0.2 N.D.
soil soil sample 2; outgrowth in LB +0.3 +0.2 N.D. -0.2 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 N.D. +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.1 N.D. +0.4 N.D.
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ABZR87_RS18115
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ABZR87_RS18120
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