Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS18020 and ABZR87_RS18025 are separated by 498 nucleotidesABZR87_RS18025 and ABZR87_RS18030 overlap by 4 nucleotidesABZR87_RS18030 and ABZR87_RS18035 are separated by 14 nucleotidesABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides ABZR87_RS18020: ABZR87_RS18020 - YitT family protein, at 398,565 to 399,218 _RS18020 ABZR87_RS18025: ABZR87_RS18025 - flagellar biosynthesis protein FlhA, at 399,717 to 401,852 _RS18025 ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756 _RS18030 ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553 _RS18035 ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323 _RS18040
Group Condition ABZR87_RS18020 ABZR87_RS18025 ABZR87_RS18030 ABZR87_RS18035 ABZR87_RS18040
phage Ra3_1 +0.2 -2.8 -2.7 -1.8 -2.2
phage Ra1_0.1 -0.3 -2.5 -2.5 -0.4 -2.7
phage Ra3_0.1 +0.1 -1.5 -1.7 -0.9 -1.5
soil soil sample 8; outgrowth in LB +0.2 +2.0 +1.2 -0.6 +1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +1.8 +1.5 -0.2 +1.7
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 +2.0 +1.5 +0.1 +1.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 +2.3 +1.9 -0.4 +1.3
soil soil sample 1; outgrowth in LB -0.2 +2.2 +1.5 +0.0 +2.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 +2.2 +1.7 +0.3 +1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +2.4 +2.0 -0.5 +1.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +2.7 +1.5 +0.3 +1.5
root root sample 5; outgrowth in LB -0.3 +2.5 +1.4 +1.1 +1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +2.3 +1.7 +0.8 +1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +2.2 +1.8 +1.1 +1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +2.7 +2.0 +0.4 +1.5
soil soil sample 9; outgrowth in LB +0.4 +2.6 +2.0 +0.1 +2.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 +2.9 +1.7 +0.4 +2.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +1.9 +2.1 +0.8 +2.1
root root EcoFAB sample 2; outgrowth in LB +0.4 +2.7 +2.1 +0.9 +1.8
rhizosphere rhizosphere sample 5; outgrowth in LB -0.0 +3.1 +2.1 +0.6 +2.5
rhizosphere rhizosphere sample 4; outgrowth in LB +0.2 +3.1 +1.9 +0.8 +2.4
root root sample 6; outgrowth in LB +0.4 +3.1 +2.1 +0.2 +2.6
soil soil sample 4; outgrowth in LB +0.1 +3.4 +2.1 +0.2 +2.7
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 +3.2 +2.1 +1.2 +2.4
root root sample 4; outgrowth in LB -0.3 +3.3 +2.3 +0.6 +2.7
rhizosphere rhizosphere sample 8; outgrowth in LB -0.5 +3.5 +2.4 +0.7 +2.8
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 +3.8 +2.2 +0.2 +3.0
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +3.5 +2.3 +0.7 +3.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +3.8 +2.6 +0.7 +3.3
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 +3.8 +2.5 +0.9 +3.2
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