Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotidesABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotidesABZR87_RS18000 and ABZR87_RS18005 are separated by 75 nucleotidesABZR87_RS18005 and ABZR87_RS18010 overlap by 1 nucleotides ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638 _RS17990 ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189 _RS17995 ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857 _RS18000 ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036 _RS18005 ABZR87_RS18010: ABZR87_RS18010 - arylsulfatase, at 395,036 to 397,009 _RS18010
Group Condition ABZR87_RS17990 ABZR87_RS17995 ABZR87_RS18000 ABZR87_RS18005 ABZR87_RS18010
root root sample 5; outgrowth in LB -1.3 -0.3 -2.5 +0.0 -0.0
phage Ra1_0.1 -1.2 -1.5 -0.7 -0.0 -0.0
phage Ra3_0.1 -0.8 -0.8 -1.4 -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.3 -1.3 -0.6 +0.3 +0.0
phage Ra3_1 -1.3 -0.7 -1.1 +0.2 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.0 -1.3 -0.5 +0.3 +0.0
soil soil sample 5; outgrowth in LB -0.9 -1.6 +0.1 -0.1 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.5 -0.5 -0.2 -0.2
phage Ra1_0.01 -0.5 -0.8 -0.3 +0.1 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 +0.6 -1.3 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.5 -0.9 -0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 -1.9 +0.3 -0.1 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.4 +0.6 -0.7 -0.4 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.4 -1.3 +0.8 -0.5 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -1.5 +0.7 -0.3 +0.2
carbon source Octanoic (C) -0.8 +0.6 -0.5 +0.3 -0.1
carbon source Octanoic (C) +0.7 -1.1 +0.1 -0.0 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.9 +0.5 -0.4 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 -0.2 -0.6 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.1 +1.1 +0.1 +0.1
root root sample 6; outgrowth in LB -0.3 +0.9 -0.7 +0.3 -0.0
soil soil sample 1; outgrowth in LB -0.1 +1.2 -0.1 -0.2 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.2 +0.9 +0.8 -0.2 -0.0
root root sample 4; outgrowth in LB +0.1 +0.8 +0.6 -0.3 +0.0
root root EcoFAB sample 1; outgrowth in LB +0.3 +0.8 +0.5 +0.2 +0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.3 +1.5 +0.2 -0.0 -0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.3 +0.5 +1.7 -0.3 +0.3
soil soil sample 4; outgrowth in LB +0.4 +1.0 +1.4 -0.0 +0.0
soil soil sample 9; outgrowth in LB +0.8 +1.3 +1.1 -0.2 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.4 +1.8 +1.0 +0.2 +0.1
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