Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17955 and ABZR87_RS17960 are separated by 18 nucleotidesABZR87_RS17960 and ABZR87_RS17965 are separated by 78 nucleotidesABZR87_RS17965 and ABZR87_RS17970 are separated by 124 nucleotidesABZR87_RS17970 and ABZR87_RS17975 are separated by 225 nucleotides ABZR87_RS17955: ABZR87_RS17955 - response regulator, at 382,395 to 382,808 _RS17955 ABZR87_RS17960: ABZR87_RS17960 - chemotaxis protein CheA, at 382,827 to 385,001 _RS17960 ABZR87_RS17965: ABZR87_RS17965 - chemotaxis protein CheW, at 385,080 to 385,571 _RS17965 ABZR87_RS17970: ABZR87_RS17970 - methyl-accepting chemotaxis protein, at 385,696 to 387,540 _RS17970 ABZR87_RS17975: ABZR87_RS17975 - methyl-accepting chemotaxis protein, at 387,766 to 389,688 _RS17975
Group Condition ABZR87_RS17955 ABZR87_RS17960 ABZR87_RS17965 ABZR87_RS17970 ABZR87_RS17975
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 -0.7 -0.7 -0.7
soil soil sample 5; outgrowth in LB N.D. -1.1 -1.3 +0.2 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -1.8 -0.8 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -1.3 +0.7 -0.7
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -0.7 -1.2 -0.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.8 -0.9 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 -0.2 -0.1 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.1 -0.4 -1.2 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.4 -0.6 -0.9 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. -0.6 -0.9 +0.3 -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.3 -0.3 +0.5 -1.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.4 +0.2 -0.3 -0.9
carbon source Sebacic (C) N.D. +0.5 +0.6 -1.4 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.3 -0.7 +0.7 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.3 +0.2 +0.5
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.8 +0.1 -0.9 -0.3
soil soil sample 6; outgrowth in LB N.D. -0.5 -0.1 +0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.6 +0.2 -0.4
root root sample 6; outgrowth in LB N.D. +0.5 +0.4 -0.0 -0.8
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +1.2 +0.8 -0.9 -0.9
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.3 +0.1 +0.6 -0.5
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.5 -0.3 +1.4 -0.0
root root sample 4; outgrowth in LB N.D. +0.6 +0.7 -0.4 -0.4
soil soil sample 9; outgrowth in LB N.D. +0.6 +0.7 -0.1 -0.4
nitrogen source nitrogen source nitrite 5mM N.D. +0.3 +0.2 +0.9 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 +0.5 +1.5 +0.2
soil soil EcoFAB sample 2; outgrowth in LB N.D. +0.5 +0.7 +0.8 +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +1.0 +1.0 -0.2 +0.3
root root EcoFAB sample 2; outgrowth in LB N.D. +1.3 +1.3 -0.2 -0.3
root root EcoFAB sample 1; outgrowth in LB N.D. +0.8 +0.9 +0.6 +0.1
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