Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17900 and ABZR87_RS17905 are separated by 27 nucleotidesABZR87_RS17905 and ABZR87_RS17910 overlap by 4 nucleotidesABZR87_RS17910 and ABZR87_RS17915 are separated by 71 nucleotidesABZR87_RS17915 and ABZR87_RS17920 are separated by 2 nucleotides ABZR87_RS17900: ABZR87_RS17900 - ABC transporter permease, at 372,429 to 373,259 _RS17900 ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291 _RS17905 ABZR87_RS17910: ABZR87_RS17910 - IclR family transcriptional regulator, at 374,288 to 375,106 _RS17910 ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365 _RS17915 ABZR87_RS17920: ABZR87_RS17920 - citryl-CoA lyase, at 376,368 to 377,222 _RS17920
Group Condition ABZR87_RS17900 ABZR87_RS17905 ABZR87_RS17910 ABZR87_RS17915 ABZR87_RS17920
soil soil EcoFAB sample 1; outgrowth in LB -0.4 -0.0 -2.6 -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 -1.7 -0.7 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.0 -1.6 -0.0 -0.5
soil soil EcoFAB sample 2; outgrowth in LB +0.0 -0.1 -1.6 -0.3 -0.2
carbon source Sebacic (C) -0.5 +0.0 -1.5 -0.2 +0.2
carbon source Octanoic (C) -0.0 +0.3 -1.3 -0.8 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.1 -0.2 -1.3 -0.2 +0.1
soil soil sample 4; outgrowth in LB -0.1 -0.1 -1.1 -0.1 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.4 -1.4 -0.4 -0.1
soil soil sample 6; outgrowth in LB -0.0 +0.2 -1.3 -0.1 -0.2
soil soil sample 8; outgrowth in LB +0.1 +0.0 -1.4 +0.0 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 +0.1 -1.6 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 -1.5 -0.4 +0.2
soil soil sample 9; outgrowth in LB +0.1 +0.0 -1.4 -0.0 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 -0.1 -0.5 -0.2 -0.6
rhizosphere rhizosphere sample 6; outgrowth in LB -0.1 +0.2 -0.8 -0.3 -0.2
root root EcoFAB sample 2; outgrowth in LB +0.0 +0.1 -1.2 -0.1 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.0 -1.1 -0.2 +0.0
soil soil sample 2; outgrowth in LB -0.1 +0.2 -1.0 -0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.3 -0.8 -0.3 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 +0.3 -0.8 +0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.0 -1.3 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -1.2 -0.3 +0.6
root root EcoFAB sample 1; outgrowth in LB -0.0 -0.1 -1.0 -0.0 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.3 -0.9 +0.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 -0.2 +0.4 -0.7 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 -1.2 +0.2 +0.9
carbon source Octanoic (C) -0.1 +0.5 -0.9 +0.1 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.1 +1.2 -0.4 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -0.0 +1.6 -0.2 -0.3
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