Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17590 and ABZR87_RS17595 are separated by 294 nucleotidesABZR87_RS17595 and ABZR87_RS17600 are separated by 285 nucleotidesABZR87_RS17600 and ABZR87_RS17605 overlap by 4 nucleotidesABZR87_RS17605 and ABZR87_RS17610 overlap by 4 nucleotides ABZR87_RS17590: ABZR87_RS17590 - sensor domain-containing diguanylate cyclase, at 309,168 to 310,685 _RS17590 ABZR87_RS17595: ABZR87_RS17595 - hypothetical protein, at 310,980 to 311,174 _RS17595 ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093 _RS17600 ABZR87_RS17605: ABZR87_RS17605 - AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase, at 314,090 to 315,853 _RS17605 ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619 _RS17610
Group Condition ABZR87_RS17590 ABZR87_RS17595 ABZR87_RS17600 ABZR87_RS17605 ABZR87_RS17610
carbon source Octanoic (C) +0.3 -3.0 -0.1 -0.3 +0.1
phage Ra1_0.1 -0.0 -1.8 -0.1 +0.0 -0.3
root root sample 6; outgrowth in LB +0.4 -2.9 -0.0 +1.0 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 -2.1 -0.2 +0.1 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 -0.9 -0.1 -0.5 -0.3
carbon source Octanoic (C) +0.2 -2.2 +0.2 +0.0 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.0 +0.1 -0.6 +0.1
nitrogen source nitrogen source nitrite 1mM +0.0 -1.0 -0.0 -0.3 -0.2
carbon source D-Xylose (C) -0.0 -1.3 +0.0 +0.3 -0.3
nitrogen source nitrogen source nitrite 5mM +0.1 -1.2 +0.1 -0.2 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -1.7 +0.1 +0.5 +0.0
phage Ra3_0.01 +0.0 -1.0 -0.1 +0.3 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.6 +0.2 -0.6 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.6 +0.1 -0.7 +0.4
carbon source Sebacic (C) +0.2 +0.2 +0.1 -0.9 -0.5
root root EcoFAB sample 2; outgrowth in LB +0.1 -0.9 +0.1 +0.2 -0.2
carbon source Protocatechuic Acid (C) -0.2 +0.5 -0.0 -0.3 -0.4
carbon source L-Glutamic (C) +0.1 +0.5 +0.0 -0.4 -0.6
carbon source Heptanoic (C) -0.0 +0.1 +0.2 -0.8 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -0.9 -0.1 +0.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.2 +0.2 +0.7 -0.5
root root sample 5; outgrowth in LB -0.0 -0.5 -0.3 +0.7 +0.5
soil soil sample 4; outgrowth in LB +0.1 +0.9 +0.0 +0.4 -0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.0 +0.6 -0.2 +0.1 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +1.2 -0.1 +0.0 +0.3
root root EcoFAB sample 1; outgrowth in LB +0.0 +0.2 +0.1 +0.6 +0.6
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.6 +0.1 +0.3 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 +0.2 -0.2 +1.1
root root sample 4; outgrowth in LB +0.1 +1.2 -0.1 +1.0 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +2.6 +0.4 +0.0 +0.6
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