Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17405 and ABZR87_RS17410 are separated by 78 nucleotidesABZR87_RS17410 and ABZR87_RS17415 overlap by 4 nucleotidesABZR87_RS17415 and ABZR87_RS17420 overlap by 4 nucleotidesABZR87_RS17420 and ABZR87_RS17425 are separated by 64 nucleotides ABZR87_RS17405: ABZR87_RS17405 - nucleobase:cation symporter-2 family protein, at 263,517 to 264,860 _RS17405 ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069 _RS17410 ABZR87_RS17415: ABZR87_RS17415 - UbiX family flavin prenyltransferase, at 266,066 to 266,707 _RS17415 ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095 _RS17420 ABZR87_RS17425: ABZR87_RS17425 - amidohydrolase family protein, at 268,160 to 269,083 _RS17425
Group Condition ABZR87_RS17405 ABZR87_RS17410 ABZR87_RS17415 ABZR87_RS17420 ABZR87_RS17425
root root sample 6; outgrowth in LB -0.9 -0.7 +0.1 -0.2 -0.3
carbon source Octanoic (C) -2.1 +0.7 -0.3 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -1.2 -0.3 +0.3 -0.4
micoeukaryotes C.elegans, mixed culture-2 -0.8 -0.2 -0.5 -0.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 -0.3 -0.5 -0.2 -0.0
phage Ra3_1 -0.8 -0.4 +0.0 -0.3 +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 -0.6 -0.0 -0.2 +0.1
root root EcoFAB sample 2; outgrowth in LB -0.7 -0.4 +0.1 -0.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 -0.9 -0.4 +0.1 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB -1.4 +0.1 +0.3 -0.2 +0.3
nitrogen source nitrogen source nitrate 5mM -0.7 -0.1 +0.3 -0.2 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 +0.2 +0.1 -0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.2 -0.3 +0.4 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.9 +0.4 -0.1 -0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.7 -0.2 +0.2 +0.0
soil soil sample 6; outgrowth in LB -0.5 -0.4 +0.0 +0.3 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.5 -0.8 +0.2 +0.1 -0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.9 +0.0 -0.4 -0.3 -0.4
carbon source Sebacic (C) +0.4 -0.4 +0.2 -0.4 +0.0
soil soil sample 8; outgrowth in LB -0.7 -0.1 +0.2 +0.4 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +1.6 -0.5 -0.8 +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.6 -0.3 +0.7 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.3 +1.4 -0.1 -0.4
nitrogen source nitrogen source nitrite 0.5mM -0.4 +0.1 +0.5 +0.2 +0.3
carbon source Disodium Glutarate (C) +0.4 +0.2 +0.2 +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 -0.3 -0.4 +0.4 +0.3
carbon source butyrate (C) +0.6 +0.4 -0.2 -0.0 +0.3
carbon source adipate (C) +0.4 +0.4 +0.2 +0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 +0.5 +0.4 +0.3
nitrogen source nitrogen source nitrite 0.5mM +0.6 +0.7 +0.5 -0.0 +0.3
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