Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS17240 and ABZR87_RS17245 are separated by 77 nucleotidesABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotidesABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotidesABZR87_RS17255 and ABZR87_RS17260 are separated by 451 nucleotides ABZR87_RS17240: ABZR87_RS17240 - alkyl hydroperoxide reductase subunit F, at 225,685 to 227,259 _RS17240 ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775 _RS17250 ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 ABZR87_RS17260: ABZR87_RS17260 - ferric iron uptake transcriptional regulator, at 230,459 to 230,914 _RS17260
Group Condition ABZR87_RS17240 ABZR87_RS17245 ABZR87_RS17250 ABZR87_RS17255 ABZR87_RS17260
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -2.1 -0.2 -0.1 -0.0 +0.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.7 +0.2 -0.4 -0.1 -0.1
carbon source Protocatechuic Acid (C) -2.3 -0.0 +0.3 +0.4 -0.5
soil soil EcoFAB sample 1; outgrowth in LB -1.5 -0.2 -0.2 -0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.0 -0.4 -0.6 +0.1 +0.2
soil soil sample 1; outgrowth in LB -1.0 -0.4 -0.1 -0.1 -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.5 +0.2 -0.1 -0.0 -0.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.3 -0.2 -0.1 +0.0 -0.1
soil soil sample 9; outgrowth in LB -0.8 +0.5 -0.7 -0.1 -0.2
carbon source Octanoic (C) +0.6 -0.9 -1.3 -0.2 +0.4
soil soil sample 3; outgrowth in LB -1.1 -0.1 -0.1 +0.1 -0.1
soil soil sample 8; outgrowth in LB -0.9 -0.2 -0.2 +0.1 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.0 +0.1 -0.3 +0.1 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 +0.2 -0.5 +0.1 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.1 -0.3 +0.2 +0.1 +0.0
soil soil EcoFAB sample 2; outgrowth in LB -1.3 +0.5 -0.5 -0.0 +0.2
soil soil sample 7; outgrowth in LB -0.9 +0.4 -0.2 -0.1 -0.1
carbon source Sebacic (C) -0.1 +0.1 -0.8 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -0.3 +0.1 +0.4 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.3 +0.1 +0.0 +0.3 +0.0
soil soil sample 2; outgrowth in LB -0.6 +0.3 -0.4 +0.0 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.6 +0.1 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 -0.3 +0.3 +0.4
carbon source Octanoic (C) +0.4 +0.2 -0.9 +0.0 +0.1
carbon source Azelaic (C) +0.2 -0.6 +0.4 -0.1 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 +0.5 +0.2 -0.1 -0.1
carbon source Protocatechuic Acid (C) -0.4 -0.1 +0.6 +0.3 -0.2
root root sample 5; outgrowth in LB +0.3 +0.5 +0.3 +0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.5 -0.2 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 +0.4 +0.0 -0.1 -0.1
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