Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16765 and ABZR87_RS16770 are separated by 205 nucleotidesABZR87_RS16770 and ABZR87_RS16775 are separated by 65 nucleotidesABZR87_RS16775 and ABZR87_RS16780 are separated by 885 nucleotidesABZR87_RS16780 and ABZR87_RS16785 are separated by 53 nucleotides ABZR87_RS16765: ABZR87_RS16765 - isochorismatase family cysteine hydrolase, at 112,592 to 113,161 _RS16765 ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770 ABZR87_RS16775: ABZR87_RS16775 - chloride channel protein, at 116,375 to 117,685 _RS16775 ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865 _RS16780 ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308 _RS16785
Group Condition ABZR87_RS16765 ABZR87_RS16770 ABZR87_RS16775 ABZR87_RS16780 ABZR87_RS16785
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 +0.0 -0.3 +0.1 -0.6
nitrogen source nitrogen source nitrite 0.5mM -0.4 -0.2 +0.0 -0.0 -0.2
carbon source Octanoic (C) -0.4 -0.1 -0.2 -0.0 +0.1
root root sample 6; outgrowth in LB -0.4 +0.1 -0.2 +0.1 +0.2
root root sample 5; outgrowth in LB -0.3 +0.0 -0.2 +0.1 +0.2
carbon source Hexanoic (C) -0.4 -0.0 +0.0 +0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.5 +0.0 -0.4 +0.1 -0.2
nitrogen source nitrogen source nitrite 0.5mM +0.1 -0.1 +0.2 +0.0 -0.3
carbon source Pimelic (C) -0.4 +0.0 +0.0 +0.1 +0.3
phage Ra3_1 -0.2 +0.1 +0.2 +0.1 -0.2
carbon source Hexanoic (C) -0.3 -0.0 -0.0 +0.0 +0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.1 +0.1 -0.2 -0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 -0.3 +0.0 -0.0
carbon source propionate (C) -0.3 +0.1 +0.0 +0.1 +0.3
carbon source Sebacic (C) +0.4 -0.0 +0.0 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.1 -0.0 -0.1 -0.4
carbon source L-Glutamic (C) +0.4 +0.0 +0.1 -0.1 -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.3 -0.1 -0.5 -0.1 +0.7
carbon source acetate (C) -0.2 -0.0 -0.1 +0.1 +0.6
carbon source Valeric (C) -0.1 +0.1 +0.1 -0.1 +0.4
carbon source adipate (C) -0.1 +0.0 +0.3 +0.1 +0.2
carbon source Lauric (C) -0.2 +0.1 +0.1 +0.0 +0.4
carbon source Azelaic (C) +0.1 +0.2 -0.1 +0.1 +0.2
carbon source Heptanoic (C) -0.1 +0.1 +0.1 -0.0 +0.4
carbon source D-Glucose (C) -0.1 +0.0 -0.0 +0.0 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 +0.0 +0.0 +0.1
carbon source Octanoic (C) -0.0 -0.2 +0.1 -0.0 +0.8
carbon source Heptanoic (C) +0.0 +0.1 +0.2 +0.1 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +0.1 -0.1 -0.1 +0.1
root root EcoFAB sample 2; outgrowth in LB +0.3 +0.2 -0.1 +0.1 +0.5
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