Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16750 and ABZR87_RS16755 are separated by 51 nucleotidesABZR87_RS16755 and ABZR87_RS16760 are separated by 239 nucleotidesABZR87_RS16760 and ABZR87_RS16765 are separated by 23 nucleotidesABZR87_RS16765 and ABZR87_RS16770 are separated by 205 nucleotides ABZR87_RS16750: ABZR87_RS16750 - propionate catabolism operon regulatory protein PrpR, at 108,217 to 110,163 _RS16750 ABZR87_RS16755: ABZR87_RS16755 - HD-GYP domain-containing protein, at 110,215 to 110,982 _RS16755 ABZR87_RS16760: ABZR87_RS16760 - GGDEF domain-containing protein, at 111,222 to 112,568 _RS16760 ABZR87_RS16765: ABZR87_RS16765 - isochorismatase family cysteine hydrolase, at 112,592 to 113,161 _RS16765 ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770
Group Condition ABZR87_RS16750 ABZR87_RS16755 ABZR87_RS16760 ABZR87_RS16765 ABZR87_RS16770
carbon source propionate (C) -3.8 +0.1 -0.5 -0.0 -0.1
carbon source propionate (C) -3.3 +0.1 -0.5 -0.3 +0.1
carbon source Trans-2-methyl-2-butenoic (C) -3.4 +0.2 -0.6 +0.1 +0.0
carbon source propionate (C) -3.7 +0.1 +0.1 -0.2 +0.0
carbon source Valeric (C) -2.9 -0.1 -0.5 -0.1 -0.0
carbon source Trans-2-methyl-2-butenoic (C) -3.0 +0.0 -0.5 -0.0 +0.0
carbon source propionate (C) -3.1 +0.3 -0.3 -0.1 +0.0
carbon source Valeric (C) -2.8 +0.1 -0.4 -0.1 +0.1
carbon source Heptanoic (C) -2.1 +0.2 -0.7 +0.0 +0.1
carbon source Heptanoic (C) -2.0 +0.2 +0.2 -0.1 +0.1
root root sample 6; outgrowth in LB +0.1 -0.7 -0.6 -0.4 +0.1
carbon source Sebacic (C) -0.2 -0.1 -0.9 +0.0 +0.0
carbon source Suberic (C) -0.2 +0.1 -0.9 -0.1 -0.1
carbon source Hexanoic (C) -0.1 +0.2 -0.7 -0.3 -0.0
carbon source Octanoic (C) +0.1 -1.0 +0.5 -0.4 -0.1
carbon source Dodecandioic (C) -0.2 +0.3 -1.0 -0.0 -0.0
carbon source Sebacic (C) -0.9 -0.0 +0.3 +0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.4 +0.1 +0.7 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 +0.6 -0.2 -0.4 +0.0
carbon source L-Glutamic (C) -0.6 +0.3 -0.1 +0.4 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.5 +0.2 +0.4 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 +0.4 -0.8 +0.2 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.7 +0.2 +0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.6 +0.8 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +1.0 -0.0 -0.1
root root sample 4; outgrowth in LB +0.1 +1.1 -0.7 +0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 +0.9 +0.2 -0.0
root root sample 5; outgrowth in LB -0.2 +0.0 +1.2 -0.3 +0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 +0.5 +0.3 +0.5 +0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.0 +0.4 +0.8 +0.3 -0.1
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