Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16740 and ABZR87_RS16745 are separated by 46 nucleotidesABZR87_RS16745 and ABZR87_RS16750 are separated by 195 nucleotidesABZR87_RS16750 and ABZR87_RS16755 are separated by 51 nucleotidesABZR87_RS16755 and ABZR87_RS16760 are separated by 239 nucleotides ABZR87_RS16740: ABZR87_RS16740 - 2-methylcitrate synthase, at 105,909 to 107,078 _RS16740 ABZR87_RS16745: ABZR87_RS16745 - methylisocitrate lyase, at 107,125 to 108,021 _RS16745 ABZR87_RS16750: ABZR87_RS16750 - propionate catabolism operon regulatory protein PrpR, at 108,217 to 110,163 _RS16750 ABZR87_RS16755: ABZR87_RS16755 - HD-GYP domain-containing protein, at 110,215 to 110,982 _RS16755 ABZR87_RS16760: ABZR87_RS16760 - GGDEF domain-containing protein, at 111,222 to 112,568 _RS16760
Group Condition ABZR87_RS16740 ABZR87_RS16745 ABZR87_RS16750 ABZR87_RS16755 ABZR87_RS16760
carbon source propionate (C) -4.8 -6.6 -3.3 +0.1 -0.5
carbon source propionate (C) -6.3 -5.3 -3.7 +0.1 +0.1
carbon source Trans-2-methyl-2-butenoic (C) -6.1 -4.6 -3.0 +0.0 -0.5
carbon source propionate (C) -5.1 -5.2 -3.1 +0.3 -0.3
carbon source Trans-2-methyl-2-butenoic (C) -6.0 -3.3 -3.4 +0.2 -0.6
carbon source propionate (C) -4.7 -4.1 -3.8 +0.1 -0.5
carbon source Valeric (C) -4.8 -4.0 -2.9 -0.1 -0.5
carbon source Heptanoic (C) -5.1 -4.5 -2.1 +0.2 -0.7
carbon source Heptanoic (C) -5.9 -4.3 -2.0 +0.2 +0.2
carbon source Valeric (C) -4.7 -3.6 -2.8 +0.1 -0.4
carbon source Sebacic (C) -3.4 -0.3 -0.9 -0.0 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -2.4 -0.2 -0.0 +0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.6 -0.2 -0.5 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.2 +0.4 -0.1 -0.7 +0.2
carbon source Sebacic (C) -1.0 -0.1 -0.2 -0.1 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -0.5 -0.2 +0.1 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -2.1 +0.2 +0.3 +0.4 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.1 -0.5 -0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 +0.2 -0.1 -0.5 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.9 -0.2 -0.0 +0.5 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -0.1 -0.3 -0.1 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 +0.2 -0.2 -0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.6 +0.1 -0.6 +0.8
no_plant_soil no_plant_soil sample 3; outgrowth in LB -2.2 +0.3 +0.1 +0.1 +0.5
soil soil EcoFAB sample 1; outgrowth in LB -2.7 +0.6 -0.0 +0.4 +0.8
soil soil EcoFAB sample 2; outgrowth in LB -0.9 +0.4 +0.2 -0.0 -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.0 -0.2 -0.2 +0.0 +0.8
root root sample 5; outgrowth in LB -0.7 -0.5 -0.2 +0.0 +1.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.9 +0.1 -0.2 +0.0 +0.7
root root sample 4; outgrowth in LB +0.5 +0.1 +0.1 +1.1 -0.7
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