Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16720 and ABZR87_RS16725 are separated by 162 nucleotidesABZR87_RS16725 and ABZR87_RS16730 are separated by 82 nucleotidesABZR87_RS16730 and ABZR87_RS16735 overlap by 4 nucleotidesABZR87_RS16735 and ABZR87_RS16740 are separated by 276 nucleotides ABZR87_RS16720: ABZR87_RS16720 - collagen-like triple helix repeat-containing protein, at 100,155 to 101,300 _RS16720 ABZR87_RS16725: ABZR87_RS16725 - antibiotic biosynthesis monooxygenase, at 101,463 to 101,771 _RS16725 ABZR87_RS16730: ABZR87_RS16730 - 2-methylaconitate cis-trans isomerase PrpF, at 101,854 to 103,038 _RS16730 ABZR87_RS16735: ABZR87_RS16735 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 103,035 to 105,632 _RS16735 ABZR87_RS16740: ABZR87_RS16740 - 2-methylcitrate synthase, at 105,909 to 107,078 _RS16740
Group Condition ABZR87_RS16720 ABZR87_RS16725 ABZR87_RS16730 ABZR87_RS16735 ABZR87_RS16740
carbon source Trans-2-methyl-2-butenoic (C) +0.6 N.D. -7.0 -6.7 -6.1
carbon source Trans-2-methyl-2-butenoic (C) +0.3 N.D. -6.5 -5.8 -6.0
carbon source propionate (C) -0.0 N.D. -5.4 -5.0 -6.3
carbon source Heptanoic (C) +0.7 N.D. -5.7 -5.9 -5.9
carbon source Heptanoic (C) +1.4 N.D. -6.0 -6.2 -5.1
soil soil EcoFAB sample 1; outgrowth in LB -4.3 N.D. -4.1 -4.2 -2.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB -5.0 N.D. -2.4 -4.6 -2.2
carbon source propionate (C) -0.1 N.D. -4.1 -4.9 -4.7
carbon source Valeric (C) +1.0 N.D. -3.9 -4.6 -4.8
carbon source propionate (C) +1.5 N.D. -4.1 -4.6 -4.8
carbon source propionate (C) +1.2 N.D. -3.6 -4.4 -5.1
carbon source Valeric (C) +2.3 N.D. -5.1 -3.9 -4.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.1 N.D. -4.8 -3.3 -2.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 N.D. -2.9 -2.5 -2.2
carbon source Sebacic (C) -0.9 N.D. -1.8 -2.9 -3.4
soil soil EcoFAB sample 2; outgrowth in LB -0.8 N.D. -3.5 -2.9 -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 N.D. -1.7 -3.8 -2.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +1.6 N.D. -3.3 -3.9 -1.9
root root EcoFAB sample 1; outgrowth in LB +0.3 N.D. -3.2 -3.2 -0.5
root root EcoFAB sample 2; outgrowth in LB -3.5 N.D. -1.5 -1.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. -2.1 -2.9 -1.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. -2.3 -2.7 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 N.D. -2.1 -3.3 -1.3
soil soil sample 5; outgrowth in LB -3.0 N.D. -1.1 -1.5 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. -2.2 -2.3 -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. -1.9 -2.8 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. -1.4 -2.6 -1.7
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +1.0 N.D. -2.3 -2.5 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 N.D. -2.0 -2.3 -1.2
carbon source Octanoic (C) +2.4 N.D. -2.0 -1.3 +0.4
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ABZR87_RS16720
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