Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16555 and ABZR87_RS16560 overlap by 4 nucleotidesABZR87_RS16560 and ABZR87_RS16565 are separated by 19 nucleotidesABZR87_RS16565 and ABZR87_RS16570 are separated by 143 nucleotidesABZR87_RS16570 and ABZR87_RS16575 are separated by 46 nucleotides ABZR87_RS16555: ABZR87_RS16555 - AMP-binding protein, at 64,021 to 65,637 _RS16555 ABZR87_RS16560: ABZR87_RS16560 - thioesterase family protein, at 65,634 to 66,062 _RS16560 ABZR87_RS16565: ABZR87_RS16565 - RidA family protein, at 66,082 to 66,474 _RS16565 ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469 _RS16570 ABZR87_RS16575: ABZR87_RS16575 - ABC transporter ATP-binding protein, at 67,516 to 68,268 _RS16575
Group Condition ABZR87_RS16555 ABZR87_RS16560 ABZR87_RS16565 ABZR87_RS16570 ABZR87_RS16575
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 N.D. -0.6 -0.5
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.5 N.D. -0.8 -0.2
carbon source acetate (C) -0.2 -0.5 N.D. -0.2 -0.3
root root sample 6; outgrowth in LB +0.1 -0.1 N.D. -0.8 -0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.6 N.D. -0.4 -0.3
phage Ra1_0.1 +0.1 -0.5 N.D. -0.5 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.3 -0.5 N.D. -0.6 +0.1
carbon source Protocatechuic Acid (C) -0.1 -0.3 N.D. +0.1 -0.4
carbon source Octanoic (C) -0.5 +0.4 N.D. -0.3 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 N.D. -1.5 +0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.1 N.D. -0.7 +0.1
carbon source propionate (C) -0.0 +0.3 N.D. -0.5 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.9 N.D. -0.2 +0.2
carbon source D-Glucose (C) -0.1 +0.4 N.D. -0.6 -0.1
carbon source Sebacic (C) +0.0 +0.6 N.D. -0.8 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 N.D. -0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.7 N.D. +0.1 -0.7
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 -0.3 N.D. +0.4 -0.3
carbon source Azelaic (C) -0.3 +1.0 N.D. -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 N.D. -0.5 +0.0
carbon source Octanoic (C) -0.5 +0.8 N.D. -0.4 +0.2
carbon source L-Glutamic (C) +0.2 -0.5 N.D. +0.5 +0.0
carbon source propionate (C) -0.2 +0.6 N.D. -0.2 +0.1
carbon source Dodecandioic (C) +0.2 +0.5 N.D. -0.5 +0.1
carbon source Lauric (C) -0.1 +0.7 N.D. -0.2 -0.0
root root sample 5; outgrowth in LB -0.1 -0.2 N.D. +1.1 -0.2
carbon source Heptanoic (C) -0.4 +1.1 N.D. +0.1 -0.2
carbon source Heptanoic (C) -0.2 +1.2 N.D. -0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 N.D. +0.6 -0.1
carbon source Sebacic (C) +0.4 +0.4 N.D. +0.2 -0.2
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