Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16510 and ABZR87_RS16515 are separated by 110 nucleotidesABZR87_RS16515 and ABZR87_RS16520 are separated by 97 nucleotidesABZR87_RS16520 and ABZR87_RS16525 are separated by 27 nucleotidesABZR87_RS16525 and ABZR87_RS16530 are separated by 136 nucleotides ABZR87_RS16510: ABZR87_RS16510 - DUF2076 family protein, at 54,848 to 55,573 _RS16510 ABZR87_RS16515: ABZR87_RS16515 - helix-turn-helix domain-containing protein, at 55,684 to 56,655 _RS16515 ABZR87_RS16520: ABZR87_RS16520 - tautomerase family protein, at 56,753 to 57,205 _RS16520 ABZR87_RS16525: ABZR87_RS16525 - dienelactone hydrolase family protein, at 57,233 to 58,048 _RS16525 ABZR87_RS16530: ABZR87_RS16530 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 58,185 to 60,563 _RS16530
Group Condition ABZR87_RS16510 ABZR87_RS16515 ABZR87_RS16520 ABZR87_RS16525 ABZR87_RS16530
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -2.1 N.D. +0.0 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -2.3 N.D. +0.6 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 -1.4 N.D. +0.1 +0.3
carbon source succinate (C) -0.1 -0.8 N.D. -0.1 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.8 N.D. -0.1 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.1 N.D. +0.2 -0.6
carbon source acetate (C) -0.0 -0.9 N.D. +0.1 -0.1
micoeukaryotes C.elegans, mixed culture-2 +0.0 -1.1 N.D. +0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.8 N.D. -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 N.D. -0.2 +0.1
carbon source Hexanoic (C) +0.2 -0.7 N.D. +0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.4 -0.5 N.D. +0.0 +0.2
carbon source Hexanoic (C) +0.0 -0.5 N.D. +0.2 -0.3
carbon source Octanoic (C) +0.2 -0.6 N.D. +0.6 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.6 N.D. +0.2 -0.2
carbon source Heptanoic (C) +0.1 -0.4 N.D. +0.4 -0.1
nitrogen source nitrogen source nitrate 20mM -0.4 +0.3 N.D. -0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.6 N.D. +0.3 +0.0
carbon source Azelaic (C) -0.3 +0.7 N.D. -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.0 +0.4 N.D. -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 N.D. +0.1 -0.4
carbon source Sebacic (C) -0.7 +0.2 N.D. +0.6 +0.3
carbon source Heptanoic (C) +0.3 +0.0 N.D. +0.4 -0.3
root root sample 6; outgrowth in LB +0.6 +0.3 N.D. -0.2 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.3 +0.5 N.D. +0.2 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB -0.2 +0.6 N.D. +0.3 +0.0
carbon source Octanoic (C) -0.1 +0.4 N.D. +0.9 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.7 N.D. -0.2 +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 +1.0 N.D. -0.0 -0.1
root root sample 5; outgrowth in LB -0.7 +2.0 N.D. -0.1 +0.4
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