Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16295 and ABZR87_RS16300 are separated by 3 nucleotidesABZR87_RS16300 and ABZR87_RS16305 overlap by 4 nucleotidesABZR87_RS16305 and ABZR87_RS16310 overlap by 4 nucleotidesABZR87_RS16310 and ABZR87_RS16315 are separated by 123 nucleotides ABZR87_RS16295: ABZR87_RS16295 - MFS transporter, at 6,097 to 7,437 _RS16295 ABZR87_RS16300: ABZR87_RS16300 - sensor histidine kinase, at 7,441 to 9,357 _RS16300 ABZR87_RS16305: ABZR87_RS16305 - sigma-54 dependent transcriptional regulator, at 9,354 to 10,712 _RS16305 ABZR87_RS16310: ABZR87_RS16310 - YhfC family glutamic-type intramembrane protease, at 10,709 to 11,509 _RS16310 ABZR87_RS16315: ABZR87_RS16315 - hypothetical protein, at 11,633 to 12,073 _RS16315
Group Condition ABZR87_RS16295 ABZR87_RS16300 ABZR87_RS16305 ABZR87_RS16310 ABZR87_RS16315
carbon source Octanoic (C) +0.2 -1.2 -0.2 -0.6 -0.3
carbon source propionate (C) -0.2 -0.7 -0.1 -0.3 -0.3
carbon source Azelaic (C) -0.0 -0.3 -0.4 -0.2 -0.4
carbon source Sebacic (C) -0.1 -0.4 -0.1 -0.2 -0.6
carbon source Heptanoic (C) -0.2 -0.1 -0.1 -0.2 -0.5
carbon source Dodecandioic (C) -0.2 -0.5 -0.1 -0.2 -0.1
carbon source Hexanoic (C) -0.1 -0.2 -0.1 -0.2 -0.4
carbon source Dodecandioic (C) -0.1 -0.5 -0.2 -0.2 +0.0
carbon source D-Glucose (C) -0.1 -0.5 +0.0 -0.4 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.3 -0.3 -0.2 +0.2 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 +0.1 -0.2 -0.5
carbon source Octanoic (C) +0.2 -0.2 -0.1 -0.4 -0.3
carbon source Protocatechuic Acid (C) -0.2 +0.2 -0.3 -0.1 -0.3
carbon source Sebacic (C) +0.1 -0.5 -0.3 -0.2 +0.3
carbon source succinate (C) -0.2 +0.3 +0.0 -0.3 -0.3
carbon source D-Glucose (C) -0.2 -0.3 +0.2 +0.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.1 -0.1 -0.3 -0.4 +0.4
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 -0.2 +0.2 +0.3 -0.2
root root sample 5; outgrowth in LB -0.1 +0.5 +0.3 +0.3 -1.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 +0.4 -0.3 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 -0.1 +0.8 -0.2
carbon source Disodium Glutarate (C) -0.2 -0.1 -0.2 +0.6 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.0 -0.5 -0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 +0.0 -0.2 -0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.1 -0.1 +0.1 -0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.5 +0.0 -0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 -0.1 +0.2 -0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.1 +0.0 +0.3 +0.8 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.3 +0.5 -0.0 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.0 +0.3 +0.1 +0.4
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ABZR87_RS16295
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ABZR87_RS16300
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ABZR87_RS16310
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ABZR87_RS16315
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