Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16280 and ABZR87_RS16285 are separated by 318 nucleotidesABZR87_RS16285 and ABZR87_RS16290 are separated by 267 nucleotidesABZR87_RS16290 and ABZR87_RS16295 are separated by 291 nucleotidesABZR87_RS16295 and ABZR87_RS16300 are separated by 3 nucleotides ABZR87_RS16280: ABZR87_RS16280 - ParB/RepB/Spo0J family partition protein, at 2,440 to 3,450 _RS16280 ABZR87_RS16285: ABZR87_RS16285 - hypothetical protein, at 3,769 to 4,587 _RS16285 ABZR87_RS16290: ABZR87_RS16290 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 4,855 to 5,805 _RS16290 ABZR87_RS16295: ABZR87_RS16295 - MFS transporter, at 6,097 to 7,437 _RS16295 ABZR87_RS16300: ABZR87_RS16300 - sensor histidine kinase, at 7,441 to 9,357 _RS16300
Group Condition ABZR87_RS16280 ABZR87_RS16285 ABZR87_RS16290 ABZR87_RS16295 ABZR87_RS16300
carbon source Octanoic (C) N.D. -0.8 -0.5 +0.2 -1.2
carbon source Heptanoic (C) N.D. -0.9 -0.5 -0.0 -0.4
carbon source propionate (C) N.D. -0.3 -0.3 -0.2 -0.7
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.9 -0.3 -0.1 -0.1
carbon source Heptanoic (C) N.D. -0.7 -0.3 -0.2 -0.1
carbon source Octanoic (C) N.D. -0.8 -0.5 +0.2 -0.2
carbon source Lauric (C) N.D. -0.5 -0.2 -0.0 -0.3
carbon source Suberic (C) N.D. -0.1 -0.2 -0.1 -0.6
carbon source Dodecandioic (C) N.D. -0.1 -0.2 -0.2 -0.5
carbon source D-Glucose (C) N.D. -0.2 -0.2 -0.1 -0.5
carbon source Sebacic (C) N.D. -0.3 -0.1 -0.1 -0.4
carbon source D-Glucose (C) N.D. -0.1 -0.2 -0.2 -0.3
carbon source Pimelic (C) N.D. -0.3 -0.1 -0.1 -0.3
carbon source Valeric (C) N.D. -0.3 -0.3 -0.0 -0.3
carbon source Dodecandioic (C) N.D. -0.3 +0.1 -0.1 -0.5
carbon source adipate (C) N.D. -0.3 -0.2 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 +0.3 -0.2 -0.3
carbon source succinate (C) N.D. -0.4 -0.1 -0.2 +0.2
soil soil sample 3; outgrowth in LB N.D. -0.7 +0.1 -0.1 +0.2
carbon source succinate (C) N.D. -0.2 -0.2 -0.2 +0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -0.4 +0.2 +0.1 -0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.6 +0.2 +0.0 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.2 -0.2 -0.1 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.8 +0.1 +0.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.0 +0.3 +0.5
soil soil sample 1; outgrowth in LB N.D. -0.2 +0.3 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.2 +0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 +0.1 +0.2 +0.4
root root sample 5; outgrowth in LB N.D. +0.1 +0.3 -0.1 +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.3 +0.3 +0.2 +0.0
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