Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS16080 and ABZR87_RS16085 are separated by 14 nucleotidesABZR87_RS16085 and ABZR87_RS16090 are separated by 9 nucleotidesABZR87_RS16090 and ABZR87_RS16095 are separated by 55 nucleotidesABZR87_RS16095 and ABZR87_RS16100 are separated by 66 nucleotides ABZR87_RS16080: ABZR87_RS16080 - P-II family nitrogen regulator, at 3,399,700 to 3,400,038 _RS16080 ABZR87_RS16085: ABZR87_RS16085 - class I SAM-dependent methyltransferase, at 3,400,053 to 3,400,679 _RS16085 ABZR87_RS16090: ABZR87_RS16090 - NAD+ synthase, at 3,400,689 to 3,402,326 _RS16090 ABZR87_RS16095: ABZR87_RS16095 - GNAT family N-acetyltransferase, at 3,402,382 to 3,403,614 _RS16095 ABZR87_RS16100: ABZR87_RS16100 - hypothetical protein, at 3,403,681 to 3,403,872 _RS16100
Group Condition ABZR87_RS16080 ABZR87_RS16085 ABZR87_RS16090 ABZR87_RS16095 ABZR87_RS16100
carbon source Azelaic (C) -6.7 -0.2 N.D. +0.1 N.D.
carbon source Heptanoic (C) -6.6 -0.1 N.D. +0.0 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -6.3 -0.2 N.D. -0.1 N.D.
carbon source Sebacic (C) -6.0 +0.0 N.D. -0.3 N.D.
carbon source Octanoic (C) -6.0 -0.1 N.D. +0.0 N.D.
carbon source Pimelic (C) -5.2 -0.2 N.D. -0.1 N.D.
carbon source Sebacic (C) -5.5 +0.1 N.D. +0.0 N.D.
carbon source propionate (C) -4.1 -0.3 N.D. -0.0 N.D.
carbon source Octanoic (C) -4.6 +0.3 N.D. -0.1 N.D.
carbon source Dodecandioic (C) -3.8 +0.1 N.D. -0.1 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -3.7 -0.2 N.D. +0.2 N.D.
micoeukaryotes C.elegans, mixed culture-2 -3.7 +0.0 N.D. +0.2 N.D.
carbon source D-Glucose (C) -3.7 +0.2 N.D. +0.1 N.D.
carbon source Protocatechuic Acid (C) -3.2 -0.0 N.D. -0.0 N.D.
carbon source Heptanoic (C) -3.2 +0.2 N.D. -0.2 N.D.
carbon source Lauric (C) -2.8 +0.0 N.D. -0.0 N.D.
carbon source adipate (C) -2.6 -0.2 N.D. +0.0 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -2.7 +0.2 N.D. -0.2 N.D.
carbon source Dodecandioic (C) -2.4 -0.1 N.D. +0.1 N.D.
carbon source D-Glucose (C) -2.2 -0.2 N.D. -0.0 N.D.
carbon source Pimelic (C) -2.5 +0.1 N.D. +0.1 N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB -2.3 +0.1 N.D. -0.1 N.D.
root root EcoFAB sample 1; outgrowth in LB -2.1 +0.3 N.D. -0.4 N.D.
carbon source adipate (C) -1.9 -0.1 N.D. -0.1 N.D.
nitrogen source nitrogen source nitrite 0.5mM -1.7 -0.0 N.D. -0.3 N.D.
root root EcoFAB sample 2; outgrowth in LB -1.7 +0.3 N.D. -0.5 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -2.1 +0.4 N.D. -0.1 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -0.1 N.D. +0.6 N.D.
root root sample 4; outgrowth in LB -1.7 +0.7 N.D. +0.3 N.D.
root root sample 5; outgrowth in LB +3.4 -0.7 N.D. -0.4 N.D.
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